rebuild #222
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| name: Rebuild hmpxv1 | |
| on: | |
| repository_dispatch: | |
| types: | |
| - rebuild | |
| - rebuild_hmpxv1 | |
| workflow_dispatch: | |
| inputs: | |
| trial_name: | |
| description: "If set, result will be at nextstrain.org/staging/trial/trial_name/monkeypox/mpxv" | |
| required: false | |
| image: | |
| description: 'Specific container image to use for build (will override the default of "nextstrain build")' | |
| required: false | |
| env: | |
| TRIAL_NAME: ${{ github.event.inputs.trial_name }} | |
| NEXTSTRAIN_DOCKER_IMAGE: ${{ github.event.inputs.image }} | |
| jobs: | |
| rebuild_hmpxv1: | |
| permissions: | |
| id-token: write | |
| uses: nextstrain/.github/.github/workflows/pathogen-repo-build.yaml@master | |
| secrets: inherit | |
| with: | |
| runtime: aws-batch | |
| env: | | |
| NEXTSTRAIN_DOCKER_IMAGE: ${{ inputs.image }} | |
| GITHUB_RUN_ID: ${{ github.run_id }} | |
| SLACK_CHANNELS: monkeypox-updates | |
| run: | | |
| nextstrain build \ | |
| --detach \ | |
| --no-download \ | |
| --cpus 8 \ | |
| --memory 32gib \ | |
| --env AWS_DEFAULT_REGION \ | |
| --env AWS_ACCESS_KEY_ID \ | |
| --env AWS_SECRET_ACCESS_KEY \ | |
| --env GITHUB_RUN_ID \ | |
| --env SLACK_TOKEN \ | |
| --env SLACK_CHANNELS \ | |
| phylogenetic \ | |
| notify_on_deploy \ | |
| --configfiles config/hmpxv1/config.yaml config/nextstrain_automation.yaml \ | |
| --config auspice_prefix=$TRIAL_NAME |