Pin pathogen-repo-commit till build-dir support is on main (#203)
#963
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| name: CI | |
| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| workflow_dispatch: | |
| jobs: | |
| pathogen-ci: | |
| # Temporarily use this ref until the commit is merged into the main repo | |
| # PR: https://github.com/nextstrain/.github/pull/62 (opened on 2023-09-27) | |
| uses: nextstrain/.github/.github/workflows/pathogen-repo-ci.yaml@4f3074183d6ab612faed84444eefe08a5ded0c69 | |
| with: | |
| build-dir: phylogenetic | |
| lint: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: ~3 | |
| - run: pip install snakefmt | |
| - run: snakefmt --check --compact-diff . |