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[pre-commit.ci] pre-commit autoupdate #1080

[pre-commit.ci] pre-commit autoupdate

[pre-commit.ci] pre-commit autoupdate #1080

Workflow file for this run

name: CI
on:
push:
branches:
- master
pull_request:
workflow_dispatch:
jobs:
pathogen-ci:
strategy:
matrix:
runtime: [docker, conda]
permissions:
id-token: write
uses: nextstrain/.github/.github/workflows/pathogen-repo-build.yaml@master
secrets: inherit
with:
runtime: ${{ matrix.runtime }}
run: |
nextstrain build \
phylogenetic \
--configfiles build-configs/ci/config.yaml
artifact-name: output-${{ matrix.runtime }}
artifact-paths: |
phylogenetic/auspice/
phylogenetic/results/
phylogenetic/benchmarks/
phylogenetic/logs/
phylogenetic/.snakemake/log/