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description: Update "Underlying data" section to NCBI Datasets
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This should have been done as a part of #179,
but I totally missed that we have this section in the build's
description.
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joverlee521 committed Sep 15, 2023
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4 changes: 3 additions & 1 deletion config/description.md
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Expand Up @@ -16,7 +16,9 @@ Our bioinformatic processing workflow can be found at [github.com/nextstrain/mon
- clade assignment via [clade definitions defined here](https://github.com/nextstrain/monkeypox/blob/master/config/clades.tsv), to label broader MPXV clades I, IIa and IIb and to label hMPXV1 lineages A, A.1, A.1.1, etc...

#### Underlying data
We curate sequence data and metadata from [NCBI Virus](https://www.ncbi.nlm.nih.gov/labs/virus/vssi/#/virus?SeqType_s=Nucleotide&VirusLineage_ss=Monkeypox%20virus,%20taxid:10244) as starting point for these analyses. Curated sequences and metadata are available as flat files at:
We curate sequence data and metadata from the [NCBI Datasets command line tools](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/download-and-install/),
using NCBI Taxonomy ID "10244", as starting point for these analyses.
Curated sequences and metadata are available as flat files at:
- [data.nextstrain.org/files/workflows/monkeypox/sequences.fasta.xz](https://data.nextstrain.org/files/workflows/monkeypox/sequences.fasta.xz)
- [data.nextstrain.org/files/workflows/monkeypox/metadata.tsv.gz](https://data.nextstrain.org/files/workflows/monkeypox/metadata.tsv.gz)

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