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Merge pull request #187 from nextstrain/snakefmt
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chore: apply snakefmt
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corneliusroemer authored Sep 22, 2023
2 parents 01f1837 + e816097 commit 9fe0536
Showing 1 changed file with 6 additions and 4 deletions.
10 changes: 6 additions & 4 deletions ingest/workflow/snakemake_rules/trigger_rebuild.smk
Original file line number Diff line number Diff line change
Expand Up @@ -6,13 +6,15 @@ Designed to be used internally by the Nextstrain team with hard-coded paths
to expected upload flag files.
"""


rule trigger_build:
message: "Triggering monekypox builds via repository action type `rebuild`."
message:
"Triggering monekypox builds via repository action type `rebuild`."
input:
metadata_upload = "data/upload/s3/metadata.tsv-to-metadata.tsv.gz.done",
fasta_upload = "data/upload/s3/sequences.fasta-to-sequences.fasta.xz.done"
metadata_upload="data/upload/s3/metadata.tsv-to-metadata.tsv.gz.done",
fasta_upload="data/upload/s3/sequences.fasta-to-sequences.fasta.xz.done",
output:
touch("data/trigger/rebuild.done")
touch("data/trigger/rebuild.done"),
shell:
"""
./vendored/trigger-on-new-data nextstrain/monkeypox rebuild {input.metadata_upload} {input.fasta_upload}
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