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Update README #194

Merged
merged 5 commits into from
Sep 22, 2023
Merged

Update README #194

merged 5 commits into from
Sep 22, 2023

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victorlin
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Description of proposed changes

Keeping contents up to date.

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- [ ] Checks pass No functional changes

This should have been a part of 4da86a4.
tsv-utils is no longer used. It's possible that one might want to use
their own custom conda environment, but the error that arises from
missing seqkit should be meaningful enough.
This was added when a custom Docker image was used to have
Nextalign/Nextclade v2. Those are now the default in all managed
runtimes provided by Nextstrain CLI, so there is no need for this
section (where the config paths are outdated).
Rename "Installation" to "Software requirements" since the workflow is
not really something to be "installed". Move it to the top since
requirements naturally comes before usage.

Split "Data use" and "Update example data" sections to be their own
sections.

Move "Data use" to the bottom as is typical for acknowledgements.
To be consistent with other section names at the same level.
@victorlin victorlin self-assigned this Sep 22, 2023
@corneliusroemer corneliusroemer merged commit d4ae48f into master Sep 22, 2023
4 checks passed
@corneliusroemer corneliusroemer deleted the victorlin/update-readme branch September 22, 2023 21:17
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update README.
2 participants