Move ncbi taxon id to config #217
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victorlin
approved these changes
Oct 30, 2023
joverlee521
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Oct 30, 2023
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Thanks for keeping things up-to-date in monkeypox! Changes look good to me.
Consider if we should update the monkeypox description to point to the config file instead of hardcoding the taxon id. I don't think we will ever change the taxon id, but just in case they might get out of sync.
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j23414
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Oct 30, 2023
| @@ -18,7 +18,7 @@ Our bioinformatic processing workflow can be found at [github.com/nextstrain/mon | |||
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| #### Underlying data | |||
| We curate sequence data and metadata from the [NCBI Datasets command line tools](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/download-and-install/), | |||
| using NCBI Taxonomy ID "10244", as starting point for these analyses. | |||
| using an NCBI Taxonomy ID defined in [ingest/config/config.yaml](https://github.com/nextstrain/monkeypox/blob/master/ingest/config/config.yaml), as starting point for these analyses. | |||
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I realized I could have submitted this as a separate PR. But would this wording be okay, @joverlee521 ?
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