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nextstrain / mpox Public

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Fork 19
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Update ingest to pathogen-repo-template#234

Merged

joverlee521 merged 7 commits intomasternextstrain/mpox:masterfrom update-ingest-to-templatenextstrain/mpox:update-ingest-to-templateCopy head branch name to clipboard

Feb 6, 2024

+136-98

Conversation Commits7 (7)Checks Files changed

Commits

Commits on Jan 30, 2024

ingest: Consolidate source-data with config
joverlee521
committed
ingest: mv workflow/snakemake_rules/*.smk files to rules/
joverlee521
committed
ingest: Always provide default config values
joverlee521
committed
ingest: Add build-configs/nextstrain-automation
joverlee521
committed
ingest: Rename fetch_sequences to fetch_from_ncbi
joverlee521
committed
ingest: Rename transform to curate
joverlee521
committed
ingest/curate.smk: Make the field map config more user friendly
joverlee521
committed

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