Skip to content

Commit

Permalink
fix gisaid annotations;
Browse files Browse the repository at this point in the history 
these were raising a flag in
#88
  • Loading branch information
@eharkins
eharkins committed Aug 28, 2020
1 parent 1551d21 commit 26b66b2
Showing 1 changed file with 44 additions and 51 deletions.
95 changes: 44 additions & 51 deletions source-data/gisaid_annotations.tsv
View file
Original file line number Diff line number Diff line change
Expand Up @@ -793,10 +793,10 @@ Australia/VIC01/2020 EPI_ISL_406844 country_exposure China # ?
Australia/VIC01/2020 EPI_ISL_406844 genbank_accession MT007544
Australia/VIC01/2020 EPI_ISL_406844 region_exposure Asia # ?
Australia/VIC01/2020 EPI_ISL_406844 division_exposure Hubei # ?
Australia/SAP472/2020 EPI_ISL_508605 location
Australia/SAP473/2020 EPI_ISL_508606 location
Australia/SAP474/2020 EPI_ISL_508607 location
Australia/SAP475/2020 EPI_ISL_508608 location
Australia/SAP472/2020 EPI_ISL_508605 location
Australia/SAP473/2020 EPI_ISL_508606 location
Australia/SAP474/2020 EPI_ISL_508607 location
Australia/SAP475/2020 EPI_ISL_508608 location
Australia/NSW2153/2020 EPI_ISL_509505 region_exposure Asia
Australia/NSW2153/2020 EPI_ISL_509505 country_exposure China
Australia/NSW2153/2020 EPI_ISL_509505 division_exposure Hubei
Expand Down Expand Up @@ -3208,38 +3208,38 @@ Canada/SK_63/2020 EPI_ISL_429822 division Saskatchewan
Canada/SHSC1/2020 EPI_ISL_450747 division_exposure Iran
Canada/SHSC1/2020 EPI_ISL_450747 country_exposure Iran
Canada/SHSC1/2020 EPI_ISL_450747 region_exposure Asia
Canada/Qc-L00240587/2020 location Montérégie
Canada/Qc-L00240587/2020 division Quebec
Canada/Qc-L00240652/2020 location Montérégie
Canada/Qc-L00240652/2020 division Quebec
Canada/Qc-L00240685/2020 location Montérégie
Canada/Qc-L00240685/2020 division Quebec
Canada/Qc-L00240857/2020 location Montérégie
Canada/Qc-L00240857/2020 division Quebec
Canada/Qc-L00240954/2020 location Montérégie
Canada/Qc-L00240954/2020 division Quebec
Canada/Qc-L00240979/2020 location Montérégie
Canada/Qc-L00240979/2020 division Quebec
Canada/Qc-L00241026/2020 location Montérégie
Canada/Qc-L00241026/2020 division Quebec
Canada/Qc-L00241042/2020 location Montérégie
Canada/Qc-L00241042/2020 division Quebec
Canada/Qc-L00241168/2020 location Montérégie
Canada/Qc-L00241168/2020 division Quebec
Canada/Qc-L00241192/2020 location Montérégie
Canada/Qc-L00241192/2020 division Quebec
Canada/Qc-L00241205/2020 location Montérégie
Canada/Qc-L00241205/2020 division Quebec
Canada/Qc-L00241208/2020 location Montérégie
Canada/Qc-L00241208/2020 division Quebec
Canada/Qc-L00241245/2020 location Montérégie
Canada/Qc-L00241245/2020 division Quebec
Canada/Qc-L00241292/2020 location Lanaudière
Canada/Qc-L00241292/2020 division Quebec
Canada/Qc-L00241344/2020 location Montérégie
Canada/Qc-L00241344/2020 division Quebec
Canada/Qc-L00241355/2020 location Montérégie
Canada/Qc-L00241355/2020 division Quebec
Canada/Qc-L00240587/2020 EPI_ISL_450303 location Montérégie
Canada/Qc-L00240587/2020 EPI_ISL_450303 division Quebec
Canada/Qc-L00240652/2020 EPI_ISL_450304 location Montérégie
Canada/Qc-L00240652/2020 EPI_ISL_450304 division Quebec
Canada/Qc-L00240685/2020 EPI_ISL_450305 location Montérégie
Canada/Qc-L00240685/2020 EPI_ISL_450305 division Quebec
Canada/Qc-L00240857/2020 EPI_ISL_450306 location Montérégie
Canada/Qc-L00240857/2020 EPI_ISL_450306 division Quebec
Canada/Qc-L00240954/2020 EPI_ISL_450307 location Montérégie
Canada/Qc-L00240954/2020 EPI_ISL_450307 division Quebec
Canada/Qc-L00240979/2020 EPI_ISL_450308 location Montérégie
Canada/Qc-L00240979/2020 EPI_ISL_450308 division Quebec
Canada/Qc-L00241026/2020 EPI_ISL_450309 location Montérégie
Canada/Qc-L00241026/2020 EPI_ISL_450309 division Quebec
Canada/Qc-L00241042/2020 EPI_ISL_450310 location Montérégie
Canada/Qc-L00241042/2020 EPI_ISL_450310 division Quebec
Canada/Qc-L00241168/2020 EPI_ISL_450311 location Montérégie
Canada/Qc-L00241168/2020 EPI_ISL_450311 division Quebec
Canada/Qc-L00241192/2020 EPI_ISL_450312 location Montérégie
Canada/Qc-L00241192/2020 EPI_ISL_450312 division Quebec
Canada/Qc-L00241205/2020 EPI_ISL_450313 location Montérégie
Canada/Qc-L00241205/2020 EPI_ISL_450313 division Quebec
Canada/Qc-L00241208/2020 EPI_ISL_450314 location Montérégie
Canada/Qc-L00241208/2020 EPI_ISL_450314 division Quebec
Canada/Qc-L00241245/2020 EPI_ISL_450315 location Montérégie
Canada/Qc-L00241245/2020 EPI_ISL_450315 division Quebec
Canada/Qc-L00241292/2020 EPI_ISL_450316 location Lanaudière
Canada/Qc-L00241292/2020 EPI_ISL_450316 division Quebec
Canada/Qc-L00241344/2020 EPI_ISL_450317 location Montérégie
Canada/Qc-L00241344/2020 EPI_ISL_450317 division Quebec
Canada/Qc-L00241355/2020 EPI_ISL_450318 location Montérégie
Canada/Qc-L00241355/2020 EPI_ISL_450318 division Quebec
Canada/ON_MU-S1/2020 EPI_ISL_463970 division Ontario # previously Toronto
Canada/ON_MU-S1/2020 EPI_ISL_463970 location Toronto
Canada/ON_MU-S13/2020 EPI_ISL_463971 division Ontario # previously Toronto
Expand Down Expand Up @@ -25395,11 +25395,8 @@ SouthAfrica/KRISP-0190/2020 EPI_ISL_482709 division KwaZulu-Natal
SouthAfrica/KRISP-0191/2020 EPI_ISL_482710 division KwaZulu-Natal
SouthAfrica/KRISP-0192/2020 EPI_ISL_482711 division KwaZulu-Natal
SouthAfrica/KRISP-0193/2020 EPI_ISL_482848 division KwaZulu-Natal
SouthAfrica/KRISP-0193/2020 EPI_ISL_482848 location
SouthAfrica/KRISP-0194/2020 EPI_ISL_482849 division KwaZulu-Natal
SouthAfrica/KRISP-0194/2020 EPI_ISL_482849 location
SouthAfrica/KRISP-0195/2020 EPI_ISL_482850 division KwaZulu-Natal
SouthAfrica/KRISP-0195/2020 EPI_ISL_482850 location
SouthAfrica/KRISP-0196/2020 EPI_ISL_482712 division KwaZulu-Natal
SouthAfrica/KRISP-0197/2020 EPI_ISL_482713 division KwaZulu-Natal
SouthAfrica/KRISP-0198/2020 EPI_ISL_482851 division KwaZulu-Natal
Expand Down Expand Up @@ -25826,10 +25823,6 @@ SouthAfrica/KRISP-0485/2020 EPI_ISL_495561 division KwaZulu-Natal # previously K
SouthAfrica/KRISP-0487/2020 EPI_ISL_495562 division KwaZulu-Natal # previously Kzn
SouthAfrica/KRISP-0141/2020 EPI_ISL_467492 location KwaDukuza # previously Stanger
SouthAfrica/KRISP-0143/2020 EPI_ISL_467493 location KwaDukuza # previously Stanger
SouthAfrica/KRISP-0191/2020 EPI_ISL_482710 location
SouthAfrica/KRISP-0192/2020 EPI_ISL_482711 location
SouthAfrica/KRISP-0196/2020 EPI_ISL_482712 location
SouthAfrica/KRISP-0197/2020 EPI_ISL_482713 location
SouthAfrica/KRISP-0198/2020 EPI_ISL_482851 location eThekwini # previously Ethekwini
SouthAfrica/KRISP-0203/2020 EPI_ISL_482852 location eThekwini # previously Ethekwini
SouthAfrica/KRISP-0259/2020 EPI_ISL_482729 location eThekwini # previously Ethekwini
Expand Down Expand Up @@ -31103,19 +31096,19 @@ USA/TX-HMH096/2020 EPI_ISL_434801 location Greater Houston Area
USA/TX-HMH097/2020 EPI_ISL_434802 location Greater Houston Area
USA/TX-HMH098/2020 EPI_ISL_434803 location Greater Houston Area
USA/TX-HMH099/2020 EPI_ISL_434804 location Greater Houston Area
USA/UN-UW-1266/2020 EPI_ISL_476904 division
USA/UN-UW-1266/2020 EPI_ISL_476904 division
USA/UN-UW-1266/2020 EPI_ISL_476904 location # previously Unknown
USA/UN-UW-629/2020 EPI_ISL_476910 division
USA/UN-UW-629/2020 EPI_ISL_476910 division
USA/UN-UW-629/2020 EPI_ISL_476910 location # previously Unknown
USA/UN-UW-659/2020 EPI_ISL_476919 division
USA/UN-UW-659/2020 EPI_ISL_476919 division
USA/UN-UW-659/2020 EPI_ISL_476919 location # previously Unknown
USA/UN-UW-666/2020 EPI_ISL_476922 division
USA/UN-UW-666/2020 EPI_ISL_476922 division
USA/UN-UW-666/2020 EPI_ISL_476922 location # previously Unknown
USA/UN-UW-667/2020 EPI_ISL_476923 division
USA/UN-UW-667/2020 EPI_ISL_476923 division
USA/UN-UW-667/2020 EPI_ISL_476923 location # previously Unknown
USA/UN-UW-672/2020 EPI_ISL_476926 division
USA/UN-UW-672/2020 EPI_ISL_476926 division
USA/UN-UW-672/2020 EPI_ISL_476926 location # previously Unknown
USA/UN-UW-686/2020 EPI_ISL_476932 division
USA/UN-UW-686/2020 EPI_ISL_476932 division
USA/UN-UW-686/2020 EPI_ISL_476932 location # previously Unknown
USA/UPHL-01/2020 EPI_ISL_415539 country_exposure Japan # duncan
USA/UPHL-01/2020 EPI_ISL_415539 division_exposure Diamond Princess # duncan
Expand All @@ -31128,7 +31121,7 @@ USA/UPHL-04/2020 EPI_ISL_415542 division_exposure Grand Princess # duncan
USA/UPHL-04/2020 EPI_ISL_415542 region_exposure North America # duncan
USA/VT-CDC-0303/2020 EPI_ISL_447846 region North America
USA/VT-UW-MAYO49/2020 EPI_ISL_491004 division Vermont # previously Vt
USA/WA-S214/2020 EPI_ISL_430252 location
USA/WA-S214/2020 EPI_ISL_430252 location
USA/WA-S316/2020 EPI_ISL_434076 location Franklin County WA
USA/WA-S320/2020 EPI_ISL_434080 location Franklin County WA
USA/WA-S380/2020 EPI_ISL_434140 location Franklin County WA
Expand Down

0 comments on commit 26b66b2

Please sign in to comment.