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Decompress stream#223

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joverlee521 wants to merge 8 commits intomasternextstrain/ncov-ingest:masterfrom decompress-streamnextstrain/ncov-ingest:decompress-streamCopy head branch name to clipboard

+42-32

Commits

Commits on Oct 18, 2021

• fetch-from-gisaid: compress download with xz

  Show description for b063d38
  joverlee521

  committed
  b063d38

• notify-on-record-change: support .xz source file

  Show description for 6a8fc0c
  joverlee521

  committed
  6a8fc0c

Commits on Oct 26, 2021

• upload-to-s3: skip compression if src is compressed

  Show description for 2be0387
  joverlee521

  committed
  2be0387

• download-from-s3: skip decompression if dst is compressed

  Show description for 7380f01
  joverlee521

  committed
  7380f01

• transform-gisaid: remove trailing whitespace

  joverlee521

  committed
  9415711

• transform-gisaid: use lzma to read .xz file

  Show description for 3f3e1d4
  joverlee521

  committed
  3f3e1d4

• ingest-gisaid: use gisaid.ndjson.xz file

  Show description for fcba89c
  joverlee521

  committed
  fcba89c

• run-nextclade-full: keep input FASTA compressed

  Show description for 7e4ff36
  joverlee521

  committed
  7e4ff36