Merge pull request #241 from jordan-ort/master

nextstrain · Nov 19, 2024 · 2ebca52 · 2ebca52
2 parents 694765a + ca0a868
commit 2ebca52
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diff --git a/data/community/moncla-lab/iav-h5/ha/2.3.4.4/CHANGELOG.md b/data/community/moncla-lab/iav-h5/ha/2.3.4.4/CHANGELOG.md
@@ -1,3 +1,7 @@
+## Unreleased
+
+Updated tree.json to add mutation calling relative to A/American_wigeon/North_Carolina/AH0182517/2022
+
 ## 2024-05-08T11:39:52Z
 
 Initial release for Nextclade v3!

diff --git a/data/community/moncla-lab/iav-h5/ha/2.3.4.4/tree.json b/data/community/moncla-lab/iav-h5/ha/2.3.4.4/tree.json
@@ -106,7 +106,30 @@
     "panels": [
       "tree",
       "entropy"
-    ]
+    ],
+    "extensions": {
+      "nextclade": {
+        "ref_nodes": {
+          "default": "__root__",
+          "search": [
+            {
+              "name": "A/American_wigeon/North_Carolina/AH0182517/2022",
+              "displayName": "A/American_wigeon/North_Carolina/AH0182517/2022",
+              "description": "Amino acid identical to A/American wigeon/South Carolina/22-000345-001/2021 CVV",
+              "criteria": [
+                {
+                  "node": [
+                    {
+                      "name": ["A/American_wigeon/North_Carolina/AH0182517/2022"]
+                    }
+                  ]
+                }
+              ]
+            }
+          ]
+        }
+      }
+    }
   },
   "tree": {
     "name": "NODE_0000000",