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chore: release 2024-04-19--07-50-39Z
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Updated datasets:

- Influenza A H1N1pdm HA (nextstrain/flu/h1n1pdm/ha/CY121680)
- Influenza A H1N1pdm HA (nextstrain/flu/h1n1pdm/ha/MW626062)
- Influenza A H1N1pdm NA (nextstrain/flu/h1n1pdm/na/MW626056)
- Influenza A H3N2 HA (nextstrain/flu/h3n2/ha/CY163680)
- Influenza A H3N2 HA (nextstrain/flu/h3n2/ha/EPI1857216)
- Influenza A H3N2 NA (nextstrain/flu/h3n2/na/EPI1857215)
- Influenza B Victoria HA (nextstrain/flu/vic/ha/KX058884)
- Influenza B Victoria NA (nextstrain/flu/vic/na/CY073894)
- Mpox virus (All clades) (nextstrain/mpox/all-clades)
- Mpox virus (Clade IIb) (nextstrain/mpox/clade-iib)
- Mpox virus (Lineage B.1) (nextstrain/mpox/lineage-b.1)
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nextstrain-bot committed Apr 19, 2024
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2 changes: 1 addition & 1 deletion data/nextstrain/flu/h1n1pdm/ha/CY121680/CHANGELOG.md
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## Unreleased
## 2024-04-19T07:50:39Z

- aliasing of C.1.1.1 as D
- addition of subclades D.1 - D.4: [D.1](https://github.com/influenza-clade-nomenclature/seasonal_A-H1N1pdm_HA/blob/main/subclades/D.1.yml), [D.2](https://github.com/influenza-clade-nomenclature/seasonal_A-H1N1pdm_HA/blob/main/subclades/D.2.yml), [D.3](https://github.com/influenza-clade-nomenclature/seasonal_A-H1N1pdm_HA/blob/main/subclades/D.3.yml), [D.4](https://github.com/influenza-clade-nomenclature/seasonal_A-H1N1pdm_HA/blob/main/subclades/D.4.yml)
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2 changes: 1 addition & 1 deletion data/nextstrain/flu/h1n1pdm/ha/MW626062/CHANGELOG.md
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## Unreleased
## 2024-04-19T07:50:39Z

- aliasing of C.1.1.1 as D
- addition of subclades D.1 - D.4: [D.1](https://github.com/influenza-clade-nomenclature/seasonal_A-H1N1pdm_HA/blob/main/subclades/D.1.yml), [D.2](https://github.com/influenza-clade-nomenclature/seasonal_A-H1N1pdm_HA/blob/main/subclades/D.2.yml), [D.3](https://github.com/influenza-clade-nomenclature/seasonal_A-H1N1pdm_HA/blob/main/subclades/D.3.yml), [D.4](https://github.com/influenza-clade-nomenclature/seasonal_A-H1N1pdm_HA/blob/main/subclades/D.4.yml)
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2 changes: 1 addition & 1 deletion data/nextstrain/flu/h1n1pdm/na/MW626056/CHANGELOG.md
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## Unreleased
## 2024-04-19T07:50:39Z

- addition of subclade [C.5.3.1](https://github.com/influenza-clade-nomenclature/seasonal_A-H1N1pdm_NA/blob/main/subclades/C.5.3.1.yml)
- addition of subclade [C.5.3.2](https://github.com/influenza-clade-nomenclature/seasonal_A-H1N1pdm_NA/blob/main/subclades/C.5.3.2.yml)
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2 changes: 1 addition & 1 deletion data/nextstrain/flu/h3n2/ha/CY163680/CHANGELOG.md
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## Unreleased
## 2024-04-19T07:50:39Z

Update of the datasets with more recent data. No new clades were added on this occasion.

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2 changes: 1 addition & 1 deletion data/nextstrain/flu/h3n2/ha/EPI1857216/CHANGELOG.md
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## Unreleased
## 2024-04-19T07:50:39Z

Update of the datasets with more recent data. No new clades were added on this occasion.

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2 changes: 1 addition & 1 deletion data/nextstrain/flu/h3n2/na/EPI1857215/CHANGELOG.md
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## Unreleased
## 2024-04-19T07:50:39Z

- addition of subclade [B.4.1](https://github.com/influenza-clade-nomenclature/seasonal_A-H3N2_NA/blob/main/subclades/B.4.1.yml)
- addition of subclade [B.4.2](https://github.com/influenza-clade-nomenclature/seasonal_A-H3N2_NA/blob/main/subclades/B.4.2.yml)
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2 changes: 1 addition & 1 deletion data/nextstrain/flu/vic/ha/KX058884/CHANGELOG.md
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## Unreleased
## 2024-04-19T07:50:39Z

Update of the datasets with more recent data. No new clades were added on this occasion.

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2 changes: 1 addition & 1 deletion data/nextstrain/flu/vic/na/CY073894/CHANGELOG.md
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## Unreleased
## 2024-04-19T07:50:39Z

- revision of definitions of B.7.2 and B.7.3
- addition of subclade [B.7.4](https://github.com/influenza-clade-nomenclature/seasonal_B-Vic_NA/blob/main/subclades/B.7.4.yml)
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2 changes: 1 addition & 1 deletion data/nextstrain/mpox/all-clades/CHANGELOG.md
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## Unreleased
## 2024-04-19T07:50:39Z

- New hMPXV-1 lineages B.1.21, B.1.22, and C.1.1 are now included in the dataset. For more information on these lineages, see the [hMPXV-1 lineage definitions PR](https://github.com/mpxv-lineages/lineage-designation/pull/37)
- The sequences used in the reference trees have been updated to include the latest sequences available in Genbank as of 2024-04-16
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2 changes: 1 addition & 1 deletion data/nextstrain/mpox/clade-iib/CHANGELOG.md
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## Unreleased
## 2024-04-19T07:50:39Z

- New hMPXV-1 lineages B.1.21, B.1.22, and C.1.1 are now included in the dataset. For more information on these lineages, see the [hMPXV-1 lineage definitions PR](https://github.com/mpxv-lineages/lineage-designation/pull/37)
- The sequences used in the reference trees have been updated to include the latest sequences available in Genbank as of 2024-04-16
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2 changes: 1 addition & 1 deletion data/nextstrain/mpox/lineage-b.1/CHANGELOG.md
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## Unreleased
## 2024-04-19T07:50:39Z

- New hMPXV-1 lineages B.1.21, B.1.22, and C.1.1 are now included in the dataset. For more information on these lineages, see the [hMPXV-1 lineage definitions PR](https://github.com/mpxv-lineages/lineage-designation/pull/37)
- The sequences used in the reference trees have been updated to include the latest sequences available in Genbank as of 2024-04-16
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66 changes: 44 additions & 22 deletions data_output/index.json
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},
"versions": [
{
"tag": "unreleased",
"updatedAt": "2024-04-19T07:50:39Z",
"tag": "2024-04-19--07-50-39Z",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
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}
],
"version": {
"tag": "unreleased",
"updatedAt": "2024-04-19T07:50:39Z",
"tag": "2024-04-19--07-50-39Z",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
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},
"versions": [
{
"tag": "unreleased",
"updatedAt": "2024-04-19T07:50:39Z",
"tag": "2024-04-19--07-50-39Z",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
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}
],
"version": {
"tag": "unreleased",
"updatedAt": "2024-04-19T07:50:39Z",
"tag": "2024-04-19--07-50-39Z",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
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},
"versions": [
{
"tag": "unreleased",
"updatedAt": "2024-04-19T07:50:39Z",
"tag": "2024-04-19--07-50-39Z",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
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}
],
"version": {
"tag": "unreleased",
"updatedAt": "2024-04-19T07:50:39Z",
"tag": "2024-04-19--07-50-39Z",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
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},
"versions": [
{
"tag": "unreleased",
"updatedAt": "2024-04-19T07:50:39Z",
"tag": "2024-04-19--07-50-39Z",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
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}
],
"version": {
"tag": "unreleased",
"updatedAt": "2024-04-19T07:50:39Z",
"tag": "2024-04-19--07-50-39Z",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
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},
"versions": [
{
"tag": "unreleased",
"updatedAt": "2024-04-19T07:50:39Z",
"tag": "2024-04-19--07-50-39Z",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
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}
],
"version": {
"tag": "unreleased",
"updatedAt": "2024-04-19T07:50:39Z",
"tag": "2024-04-19--07-50-39Z",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
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},
"versions": [
{
"tag": "unreleased",
"updatedAt": "2024-04-19T07:50:39Z",
"tag": "2024-04-19--07-50-39Z",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
Expand All @@ -967,7 +978,8 @@
}
],
"version": {
"tag": "unreleased",
"updatedAt": "2024-04-19T07:50:39Z",
"tag": "2024-04-19--07-50-39Z",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
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},
"versions": [
{
"tag": "unreleased",
"updatedAt": "2024-04-19T07:50:39Z",
"tag": "2024-04-19--07-50-39Z",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
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}
],
"version": {
"tag": "unreleased",
"updatedAt": "2024-04-19T07:50:39Z",
"tag": "2024-04-19--07-50-39Z",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
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},
"versions": [
{
"tag": "unreleased",
"updatedAt": "2024-04-19T07:50:39Z",
"tag": "2024-04-19--07-50-39Z",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
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}
],
"version": {
"tag": "unreleased",
"updatedAt": "2024-04-19T07:50:39Z",
"tag": "2024-04-19--07-50-39Z",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
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},
"versions": [
{
"tag": "unreleased",
"updatedAt": "2024-04-19T07:50:39Z",
"tag": "2024-04-19--07-50-39Z",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
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}
],
"version": {
"tag": "unreleased",
"updatedAt": "2024-04-19T07:50:39Z",
"tag": "2024-04-19--07-50-39Z",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
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},
"versions": [
{
"tag": "unreleased",
"updatedAt": "2024-04-19T07:50:39Z",
"tag": "2024-04-19--07-50-39Z",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
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}
],
"version": {
"tag": "unreleased",
"updatedAt": "2024-04-19T07:50:39Z",
"tag": "2024-04-19--07-50-39Z",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
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},
"versions": [
{
"tag": "unreleased",
"updatedAt": "2024-04-19T07:50:39Z",
"tag": "2024-04-19--07-50-39Z",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
Expand All @@ -1535,7 +1556,8 @@
}
],
"version": {
"tag": "unreleased",
"updatedAt": "2024-04-19T07:50:39Z",
"tag": "2024-04-19--07-50-39Z",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
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## Unreleased
## 2024-04-19T07:50:39Z

- aliasing of C.1.1.1 as D
- addition of subclades D.1 - D.4: [D.1](https://github.com/influenza-clade-nomenclature/seasonal_A-H1N1pdm_HA/blob/main/subclades/D.1.yml), [D.2](https://github.com/influenza-clade-nomenclature/seasonal_A-H1N1pdm_HA/blob/main/subclades/D.2.yml), [D.3](https://github.com/influenza-clade-nomenclature/seasonal_A-H1N1pdm_HA/blob/main/subclades/D.3.yml), [D.4](https://github.com/influenza-clade-nomenclature/seasonal_A-H1N1pdm_HA/blob/main/subclades/D.4.yml)
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"reference name": "A/California/7/2009-egg"
},
"version": {
"tag": "unreleased",
"updatedAt": "2024-04-19T07:50:39Z",
"tag": "2024-04-19--07-50-39Z",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
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## Unreleased
## 2024-04-19T07:50:39Z

- aliasing of C.1.1.1 as D
- addition of subclades D.1 - D.4: [D.1](https://github.com/influenza-clade-nomenclature/seasonal_A-H1N1pdm_HA/blob/main/subclades/D.1.yml), [D.2](https://github.com/influenza-clade-nomenclature/seasonal_A-H1N1pdm_HA/blob/main/subclades/D.2.yml), [D.3](https://github.com/influenza-clade-nomenclature/seasonal_A-H1N1pdm_HA/blob/main/subclades/D.3.yml), [D.4](https://github.com/influenza-clade-nomenclature/seasonal_A-H1N1pdm_HA/blob/main/subclades/D.4.yml)
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"reference name": "A/Wisconsin/588/2019"
},
"version": {
"tag": "unreleased",
"updatedAt": "2024-04-19T07:50:39Z",
"tag": "2024-04-19--07-50-39Z",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
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## Unreleased
## 2024-04-19T07:50:39Z

- addition of subclade [C.5.3.1](https://github.com/influenza-clade-nomenclature/seasonal_A-H1N1pdm_NA/blob/main/subclades/C.5.3.1.yml)
- addition of subclade [C.5.3.2](https://github.com/influenza-clade-nomenclature/seasonal_A-H1N1pdm_NA/blob/main/subclades/C.5.3.2.yml)
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"reference name": "A/Wisconsin/588/2019"
},
"version": {
"tag": "unreleased",
"updatedAt": "2024-04-19T07:50:39Z",
"tag": "2024-04-19--07-50-39Z",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
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## Unreleased
## 2024-04-19T07:50:39Z

Update of the datasets with more recent data. No new clades were added on this occasion.

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"reference name": "A/Wisconsin/67/2005-egg"
},
"version": {
"tag": "unreleased",
"updatedAt": "2024-04-19T07:50:39Z",
"tag": "2024-04-19--07-50-39Z",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
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@@ -1,4 +1,4 @@
## Unreleased
## 2024-04-19T07:50:39Z

Update of the datasets with more recent data. No new clades were added on this occasion.

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"reference name": "A/Darwin/6/2021"
},
"version": {
"tag": "unreleased",
"updatedAt": "2024-04-19T07:50:39Z",
"tag": "2024-04-19--07-50-39Z",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
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## Unreleased
## 2024-04-19T07:50:39Z

- addition of subclade [B.4.1](https://github.com/influenza-clade-nomenclature/seasonal_A-H3N2_NA/blob/main/subclades/B.4.1.yml)
- addition of subclade [B.4.2](https://github.com/influenza-clade-nomenclature/seasonal_A-H3N2_NA/blob/main/subclades/B.4.2.yml)
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"reference name": "A/Darwin/6/2021"
},
"version": {
"tag": "unreleased",
"updatedAt": "2024-04-19T07:50:39Z",
"tag": "2024-04-19--07-50-39Z",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
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## Unreleased
## 2024-04-19T07:50:39Z

Update of the datasets with more recent data. No new clades were added on this occasion.

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"reference name": "B/Brisbane/60/2008-egg"
},
"version": {
"tag": "unreleased",
"updatedAt": "2024-04-19T07:50:39Z",
"tag": "2024-04-19--07-50-39Z",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
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