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Merge pull request #231 from nextstrain/sc2-2024-09
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Update SC2 datasets
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@corneliusroemer
corneliusroemer authored Sep 25, 2024
2 parents 14a367c + 58758f8 commit c2d90b0
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124 changes: 124 additions & 0 deletions data/nextstrain/sars-cov-2/BA.2.86/CHANGELOG.md
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## Unreleased

- Include newly designated Nextstrain clades 24D (XDV.1) and 24E (KP.3.1.1)
- All 113 Pango lineages designated between 2024-07-15 and 2024-09-25 are now included, unfold below to see a list of all newly included lineages with their designation dates

<details>
<summary> Newly included lineages, with designation date in parentheses</summary>

- XEC (2024-08-07)
- KP.2.3.5 (2024-08-07)
- KP.2.3.6 (2024-08-07)
- LP.4 (2024-08-07)
- LP.1.2 (2024-08-07)
- LB.1.2.2 (2024-08-07)
- LB.1.2.3 (2024-08-07)
- KP.2.18 (2024-08-07)
- KP.2.14.1 (2024-08-07)
- MC.2 (2024-08-08)
- MC.2.1 (2024-08-08)
- KR.1.3 (2024-08-08)
- MP.1 (2024-08-08)
- MP.1.1 (2024-08-08)
- JQ.2.1.2 (2024-08-08)
- MC.4 (2024-08-08)
- MC.3 (2024-08-08)
- LB.1.3.3 (2024-08-08)
- KP.2.15.1 (2024-08-08)
- KP.3.1.7 (2024-08-08)
- MQ.1 (2024-08-08)
- MQ.2 (2024-08-08)
- KP.3.3.4 (2024-08-08)
- MR.1 (2024-08-08)
- MK.3 (2024-08-08)
- XED (2024-08-08)
- LZ.2 (2024-08-12)
- XEC.1 (2024-08-14)
- MS.1 (2024-08-15)
- KU.2.1 (2024-08-15)
- KU.2.2 (2024-08-15)
- MA.1.1 (2024-08-15)
- MA.1.1.1 (2024-08-15)
- JN.1.18.8 (2024-08-15)
- JN.1.59.1 (2024-08-15)
- JN.1.16.4 (2024-08-15)
- LU.2.1 (2024-08-15)
- LU.2.1.1 (2024-08-15)
- MT.1 (2024-08-15)
- KP.2.19 (2024-08-15)
- LF.6 (2024-08-15)
- LR.3 (2024-08-15)
- XDV.1.1 (2024-08-15)
- XDV.1.2 (2024-08-15)
- XDV.1.2.1 (2024-08-15)
- XDV.1.3 (2024-08-15)
- XDV.1.4 (2024-08-15)
- XDV.1.5 (2024-08-15)
- XDV.1.6 (2024-08-15)
- LF.7 (2024-08-15)
- MU.1 (2024-08-15)
- JN.1.4.9 (2024-08-15)
- JN.1.38.1 (2024-08-15)
- MC.5 (2024-08-15)
- MC.6 (2024-08-15)
- MC.7 (2024-08-15)
- MC.8 (2024-08-15)
- MC.8.1 (2024-08-15)
- MC.9 (2024-08-15)
- MC.10 (2024-08-15)
- MC.11 (2024-08-15)
- MC.11.1 (2024-08-15)
- MC.12 (2024-08-15)
- MC.13 (2024-08-15)
- MC.13.1 (2024-08-15)
- MC.14 (2024-08-15)
- MC.15 (2024-08-15)
- MC.16 (2024-08-15)
- MB.1.1.1 (2024-08-15)
- MV.1 (2024-08-15)
- KP.2.20 (2024-08-15)
- KP.2.20.1 (2024-08-15)
- JN.1.67 (2024-08-15)
- JN.1.67.1 (2024-08-15)
- XEF (2024-08-15)
- KP.2.22 (2024-08-16)
- KP.2.24 (2024-08-16)
- KP.2.25 (2024-08-16)
- KP.2.26 (2024-08-16)
- KR.4.1 (2024-08-16)
- KP.6 (2024-08-16)
- XEG (2024-08-16)
- KP.2.3.7 (2024-08-16)
- MW.1 (2024-08-16)
- KP.2.23 (2024-08-16)
- JN.1.68 (2024-08-16)
- LF.8 (2024-08-16)
- LF.8.1 (2024-08-16)
- LF.8.1.1 (2024-08-16)
- XEE (2024-08-16)
- MC.17 (2024-08-16)
- JN.1.16.5 (2024-08-16)
- LW.1.1 (2024-08-16)
- LW.1.2 (2024-08-16)
- KP.3.6 (2024-08-16)
- LB.1.9 (2024-08-16)
- KP.3.1.8 (2024-08-16)
- MY.1 (2024-08-16)
- XDV.1.7 (2024-08-17)
- XDV.1.8 (2024-08-17)
- XDV.1.9 (2024-08-17)
- XDR.1.1 (2024-08-17)
- XDR.1.2 (2024-08-17)
- XDV.1.10 (2024-08-17)
- XDV.1.11 (2024-08-17)
- LU.2.2 (2024-08-20)
- LB.1.4.3 (2024-08-24)
- LF.9 (2024-08-27)
- LF.9.1 (2024-08-27)
- XDV.1.7.1 (2024-09-05)
- XDV.1.9.1 (2024-09-05)
- LZ.2.1 (2024-09-05)
- MZ.1 (2024-09-05)

</details>

## 2024-07-17T12:57:03Z

- Include newly designated Nextstrain clade 24C (KP.3)
Expand Down
2 changes: 1 addition & 1 deletion data/nextstrain/sars-cov-2/BA.2.86/tree.json
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1 change: 1 addition & 0 deletions data/nextstrain/sars-cov-2/BA.2.86/tree.json.bak
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124 changes: 124 additions & 0 deletions data/nextstrain/sars-cov-2/BA.2/CHANGELOG.md
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Original file line number Diff line number Diff line change
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## Unreleased

- Include newly designated Nextstrain clades 24D (XDV.1) and 24E (KP.3.1.1)
- All 113 Pango lineages designated between 2024-07-15 and 2024-09-25 are now included, unfold below to see a list of all newly included lineages with their designation dates

<details>
<summary> Newly included lineages, with designation date in parentheses</summary>

- XEC (2024-08-07)
- KP.2.3.5 (2024-08-07)
- KP.2.3.6 (2024-08-07)
- LP.4 (2024-08-07)
- LP.1.2 (2024-08-07)
- LB.1.2.2 (2024-08-07)
- LB.1.2.3 (2024-08-07)
- KP.2.18 (2024-08-07)
- KP.2.14.1 (2024-08-07)
- MC.2 (2024-08-08)
- MC.2.1 (2024-08-08)
- KR.1.3 (2024-08-08)
- MP.1 (2024-08-08)
- MP.1.1 (2024-08-08)
- JQ.2.1.2 (2024-08-08)
- MC.4 (2024-08-08)
- MC.3 (2024-08-08)
- LB.1.3.3 (2024-08-08)
- KP.2.15.1 (2024-08-08)
- KP.3.1.7 (2024-08-08)
- MQ.1 (2024-08-08)
- MQ.2 (2024-08-08)
- KP.3.3.4 (2024-08-08)
- MR.1 (2024-08-08)
- MK.3 (2024-08-08)
- XED (2024-08-08)
- LZ.2 (2024-08-12)
- XEC.1 (2024-08-14)
- MS.1 (2024-08-15)
- KU.2.1 (2024-08-15)
- KU.2.2 (2024-08-15)
- MA.1.1 (2024-08-15)
- MA.1.1.1 (2024-08-15)
- JN.1.18.8 (2024-08-15)
- JN.1.59.1 (2024-08-15)
- JN.1.16.4 (2024-08-15)
- LU.2.1 (2024-08-15)
- LU.2.1.1 (2024-08-15)
- MT.1 (2024-08-15)
- KP.2.19 (2024-08-15)
- LF.6 (2024-08-15)
- LR.3 (2024-08-15)
- XDV.1.1 (2024-08-15)
- XDV.1.2 (2024-08-15)
- XDV.1.2.1 (2024-08-15)
- XDV.1.3 (2024-08-15)
- XDV.1.4 (2024-08-15)
- XDV.1.5 (2024-08-15)
- XDV.1.6 (2024-08-15)
- LF.7 (2024-08-15)
- MU.1 (2024-08-15)
- JN.1.4.9 (2024-08-15)
- JN.1.38.1 (2024-08-15)
- MC.5 (2024-08-15)
- MC.6 (2024-08-15)
- MC.7 (2024-08-15)
- MC.8 (2024-08-15)
- MC.8.1 (2024-08-15)
- MC.9 (2024-08-15)
- MC.10 (2024-08-15)
- MC.11 (2024-08-15)
- MC.11.1 (2024-08-15)
- MC.12 (2024-08-15)
- MC.13 (2024-08-15)
- MC.13.1 (2024-08-15)
- MC.14 (2024-08-15)
- MC.15 (2024-08-15)
- MC.16 (2024-08-15)
- MB.1.1.1 (2024-08-15)
- MV.1 (2024-08-15)
- KP.2.20 (2024-08-15)
- KP.2.20.1 (2024-08-15)
- JN.1.67 (2024-08-15)
- JN.1.67.1 (2024-08-15)
- XEF (2024-08-15)
- KP.2.22 (2024-08-16)
- KP.2.24 (2024-08-16)
- KP.2.25 (2024-08-16)
- KP.2.26 (2024-08-16)
- KR.4.1 (2024-08-16)
- KP.6 (2024-08-16)
- XEG (2024-08-16)
- KP.2.3.7 (2024-08-16)
- MW.1 (2024-08-16)
- KP.2.23 (2024-08-16)
- JN.1.68 (2024-08-16)
- LF.8 (2024-08-16)
- LF.8.1 (2024-08-16)
- LF.8.1.1 (2024-08-16)
- XEE (2024-08-16)
- MC.17 (2024-08-16)
- JN.1.16.5 (2024-08-16)
- LW.1.1 (2024-08-16)
- LW.1.2 (2024-08-16)
- KP.3.6 (2024-08-16)
- LB.1.9 (2024-08-16)
- KP.3.1.8 (2024-08-16)
- MY.1 (2024-08-16)
- XDV.1.7 (2024-08-17)
- XDV.1.8 (2024-08-17)
- XDV.1.9 (2024-08-17)
- XDR.1.1 (2024-08-17)
- XDR.1.2 (2024-08-17)
- XDV.1.10 (2024-08-17)
- XDV.1.11 (2024-08-17)
- LU.2.2 (2024-08-20)
- LB.1.4.3 (2024-08-24)
- LF.9 (2024-08-27)
- LF.9.1 (2024-08-27)
- XDV.1.7.1 (2024-09-05)
- XDV.1.9.1 (2024-09-05)
- LZ.2.1 (2024-09-05)
- MZ.1 (2024-09-05)

</details>

## 2024-07-17T12:57:03Z

- Include newly designated Nextstrain clade 24C (KP.3)
Expand Down
2 changes: 1 addition & 1 deletion data/nextstrain/sars-cov-2/BA.2/tree.json
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Large diffs are not rendered by default.

1 change: 1 addition & 0 deletions data/nextstrain/sars-cov-2/BA.2/tree.json.bak
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124 changes: 124 additions & 0 deletions data/nextstrain/sars-cov-2/XBB/CHANGELOG.md
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Original file line number Diff line number Diff line change
@@ -1,3 +1,127 @@
## Unreleased

- Include newly designated Nextstrain clades 24D (XDV.1) and 24E (KP.3.1.1)
- All 113 Pango lineages designated between 2024-07-15 and 2024-09-25 are now included, unfold below to see a list of all newly included lineages with their designation dates

<details>
<summary> Newly included lineages, with designation date in parentheses</summary>

- XEC (2024-08-07)
- KP.2.3.5 (2024-08-07)
- KP.2.3.6 (2024-08-07)
- LP.4 (2024-08-07)
- LP.1.2 (2024-08-07)
- LB.1.2.2 (2024-08-07)
- LB.1.2.3 (2024-08-07)
- KP.2.18 (2024-08-07)
- KP.2.14.1 (2024-08-07)
- MC.2 (2024-08-08)
- MC.2.1 (2024-08-08)
- KR.1.3 (2024-08-08)
- MP.1 (2024-08-08)
- MP.1.1 (2024-08-08)
- JQ.2.1.2 (2024-08-08)
- MC.4 (2024-08-08)
- MC.3 (2024-08-08)
- LB.1.3.3 (2024-08-08)
- KP.2.15.1 (2024-08-08)
- KP.3.1.7 (2024-08-08)
- MQ.1 (2024-08-08)
- MQ.2 (2024-08-08)
- KP.3.3.4 (2024-08-08)
- MR.1 (2024-08-08)
- MK.3 (2024-08-08)
- XED (2024-08-08)
- LZ.2 (2024-08-12)
- XEC.1 (2024-08-14)
- MS.1 (2024-08-15)
- KU.2.1 (2024-08-15)
- KU.2.2 (2024-08-15)
- MA.1.1 (2024-08-15)
- MA.1.1.1 (2024-08-15)
- JN.1.18.8 (2024-08-15)
- JN.1.59.1 (2024-08-15)
- JN.1.16.4 (2024-08-15)
- LU.2.1 (2024-08-15)
- LU.2.1.1 (2024-08-15)
- MT.1 (2024-08-15)
- KP.2.19 (2024-08-15)
- LF.6 (2024-08-15)
- LR.3 (2024-08-15)
- XDV.1.1 (2024-08-15)
- XDV.1.2 (2024-08-15)
- XDV.1.2.1 (2024-08-15)
- XDV.1.3 (2024-08-15)
- XDV.1.4 (2024-08-15)
- XDV.1.5 (2024-08-15)
- XDV.1.6 (2024-08-15)
- LF.7 (2024-08-15)
- MU.1 (2024-08-15)
- JN.1.4.9 (2024-08-15)
- JN.1.38.1 (2024-08-15)
- MC.5 (2024-08-15)
- MC.6 (2024-08-15)
- MC.7 (2024-08-15)
- MC.8 (2024-08-15)
- MC.8.1 (2024-08-15)
- MC.9 (2024-08-15)
- MC.10 (2024-08-15)
- MC.11 (2024-08-15)
- MC.11.1 (2024-08-15)
- MC.12 (2024-08-15)
- MC.13 (2024-08-15)
- MC.13.1 (2024-08-15)
- MC.14 (2024-08-15)
- MC.15 (2024-08-15)
- MC.16 (2024-08-15)
- MB.1.1.1 (2024-08-15)
- MV.1 (2024-08-15)
- KP.2.20 (2024-08-15)
- KP.2.20.1 (2024-08-15)
- JN.1.67 (2024-08-15)
- JN.1.67.1 (2024-08-15)
- XEF (2024-08-15)
- KP.2.22 (2024-08-16)
- KP.2.24 (2024-08-16)
- KP.2.25 (2024-08-16)
- KP.2.26 (2024-08-16)
- KR.4.1 (2024-08-16)
- KP.6 (2024-08-16)
- XEG (2024-08-16)
- KP.2.3.7 (2024-08-16)
- MW.1 (2024-08-16)
- KP.2.23 (2024-08-16)
- JN.1.68 (2024-08-16)
- LF.8 (2024-08-16)
- LF.8.1 (2024-08-16)
- LF.8.1.1 (2024-08-16)
- XEE (2024-08-16)
- MC.17 (2024-08-16)
- JN.1.16.5 (2024-08-16)
- LW.1.1 (2024-08-16)
- LW.1.2 (2024-08-16)
- KP.3.6 (2024-08-16)
- LB.1.9 (2024-08-16)
- KP.3.1.8 (2024-08-16)
- MY.1 (2024-08-16)
- XDV.1.7 (2024-08-17)
- XDV.1.8 (2024-08-17)
- XDV.1.9 (2024-08-17)
- XDR.1.1 (2024-08-17)
- XDR.1.2 (2024-08-17)
- XDV.1.10 (2024-08-17)
- XDV.1.11 (2024-08-17)
- LU.2.2 (2024-08-20)
- LB.1.4.3 (2024-08-24)
- LF.9 (2024-08-27)
- LF.9.1 (2024-08-27)
- XDV.1.7.1 (2024-09-05)
- XDV.1.9.1 (2024-09-05)
- LZ.2.1 (2024-09-05)
- MZ.1 (2024-09-05)

</details>

## 2024-07-17T12:57:03Z

- Include newly designated Nextstrain clade 24C (KP.3)
Expand Down
2 changes: 1 addition & 1 deletion data/nextstrain/sars-cov-2/XBB/tree.json
View file

Large diffs are not rendered by default.

1 change: 1 addition & 0 deletions data/nextstrain/sars-cov-2/XBB/tree.json.bak
View file

Large diffs are not rendered by default.

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