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Releases: nextstrain/nextclade_data

2024-12-04--17-05-31Z

04 Dec 17:05
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2024-12-04--17-05-31Z
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This release contains changes for datasets:

  • Human Metapneumovirus (nextstrain/hmpv/all-clades/NC_039199)
  • H5Nx clade 2.3.4.4 (community/moncla-lab/iav-h5/ha/2.3.4.4)
  • H5Nx (all clades) (community/moncla-lab/iav-h5/ha/all-clades)

Human Metapneumovirus (nextstrain/hmpv/all-clades/NC_039199)

Initial release of the dataset.

H5Nx clade 2.3.4.4 (community/moncla-lab/iav-h5/ha/2.3.4.4)

Updated private mutation QC metrics such that the typical value is the median value and the cutoff is the 97.5th percentile of private mutation counts assigned to unique GISAID sequences.

H5Nx (all clades) (community/moncla-lab/iav-h5/ha/all-clades)

Updated private mutation QC metrics such that the typical value is the median value and the cutoff is the 97.5th percentile of private mutation counts assigned to unique GISAID sequences.

Assets 5
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2024-11-27--02-51-00Z

27 Nov 02:51
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This release contains changes for datasets:

  • Influenza A H1N1pdm HA (nextstrain/flu/h1n1pdm/ha/CY121680)
  • Influenza A H1N1pdm HA (nextstrain/flu/h1n1pdm/ha/MW626062)
  • Influenza A H3N2 HA (nextstrain/flu/h3n2/ha/CY163680)
  • Influenza A H3N2 HA (nextstrain/flu/h3n2/ha/EPI1857216)
  • RSV-A (nextstrain/rsv/a/EPI_ISL_412866)
  • RSV-B (nextstrain/rsv/b/EPI_ISL_1653999)

Influenza A H1N1pdm HA (nextstrain/flu/h1n1pdm/ha/CY121680)

  • update reference trees
  • include subclade D.5 (included as proposed clades on 2024-11-05)

Influenza A H1N1pdm HA (nextstrain/flu/h1n1pdm/ha/MW626062)

  • update reference trees
  • include subclade D.5 (included as proposed clades on 2024-11-05)

Influenza A H3N2 HA (nextstrain/flu/h3n2/ha/CY163680)

  • update reference trees
  • include subclades J.1.1, J.2.1, J.2.2 (included as proposed clades on 2024-11-05)

Influenza A H3N2 HA (nextstrain/flu/h3n2/ha/EPI1857216)

  • update reference trees
  • include subclades J.1.1, J.2.1, J.2.2 (included as proposed clades on 2024-11-05)

RSV-A (nextstrain/rsv/a/EPI_ISL_412866)

  • update reference tree with more recent data

RSV-B (nextstrain/rsv/b/EPI_ISL_1653999)

  • update reference tree with more recent data.
  • include designation of B.D.E.1.1
Assets 8
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2024-11-19--14-18-53Z

19 Nov 14:19
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2024-11-19--14-18-53Z
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2024-11-19--14-18-53Z

This release contains changes for datasets:

  • SARS-CoV-2 (nextstrain/sars-cov-2/wuhan-hu-1/orfs)
  • SARS-CoV-2 (Mature proteins) (nextstrain/sars-cov-2/wuhan-hu-1/proteins)
  • SARS-CoV-2 (BA.2) (nextstrain/sars-cov-2/BA.2)
  • SARS-CoV-2 (XBB) (nextstrain/sars-cov-2/XBB)
  • SARS-CoV-2 (BA.2.86) (nextstrain/sars-cov-2/BA.2.86)
  • Mpox virus (All clades) (nextstrain/mpox/all-clades)
  • Mpox virus (Clade I) (nextstrain/mpox/clade-i)
  • Mpox virus (Clade IIb) (nextstrain/mpox/clade-iib)
  • Mpox virus (Lineage B.1) (nextstrain/mpox/lineage-b.1)
  • H5Nx clade 2.3.4.4 (community/moncla-lab/iav-h5/ha/2.3.4.4)

SARS-CoV-2 (nextstrain/sars-cov-2/wuhan-hu-1/orfs)

Fix duplicate changelog entry, nothing else changed.

SARS-CoV-2 (Mature proteins) (nextstrain/sars-cov-2/wuhan-hu-1/proteins)

Fix duplicate changelog entry, nothing else changed.

SARS-CoV-2 (BA.2) (nextstrain/sars-cov-2/BA.2)

Fix duplicate changelog entry, nothing else changed.

SARS-CoV-2 (XBB) (nextstrain/sars-cov-2/XBB)

Fix duplicate changelog entry, nothing else changed.

SARS-CoV-2 (BA.2.86) (nextstrain/sars-cov-2/BA.2.86)

Fix duplicate changelog entry, nothing else changed.

Mpox virus (All clades) (nextstrain/mpox/all-clades)

Mpox virus (Clade I) (nextstrain/mpox/clade-i)

  • Newly shared sequences are now included

Mpox virus (Clade IIb) (nextstrain/mpox/clade-iib)

  • 11 newly designated B.1 sublineages are now included. See mpxv-lineages/lineage-designation#45 for details.
  • Newly shared sequences are now included
  • The cluster QC metric's window size has been broadened to detect clusters that span a region of up to 1000bp (up from 100bp)

Mpox virus (Lineage B.1) (nextstrain/mpox/lineage-b.1)

  • 11 newly designated B.1 sublineages are now included. See mpxv-lineages/lineage-designation#45 for details.
  • Newly shared sequences are now included
  • The cluster QC metric's window size has been broadened to detect clusters that span a region of up to 1000bp (up from 100bp)

H5Nx clade 2.3.4.4 (community/moncla-lab/iav-h5/ha/2.3.4.4)

Updated tree.json to add mutation calling relative to A/American_wigeon/North_Carolina/AH0182517/2022

Assets 12
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2024-11-14--17-22-16Z

14 Nov 17:22
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2024-11-14--17-22-16Z
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2024-11-14--17-22-16Z

This release contains changes for datasets:

  • SARS-CoV-2 (nextstrain/sars-cov-2/wuhan-hu-1/orfs)
  • SARS-CoV-2 (Mature proteins) (nextstrain/sars-cov-2/wuhan-hu-1/proteins)
  • SARS-CoV-2 (BA.2) (nextstrain/sars-cov-2/BA.2)
  • SARS-CoV-2 (XBB) (nextstrain/sars-cov-2/XBB)
  • SARS-CoV-2 (BA.2.86) (nextstrain/sars-cov-2/BA.2.86)

SARS-CoV-2 (nextstrain/sars-cov-2/wuhan-hu-1/orfs)

  • Add newly designated Nextstrain clades 24H (LF.7) and 24I (MV.1)
  • Add all 128 Pango lineages newly designated between 2024-10-19 and 2024-11-14. Unfold below to see a list of all newly included lineages with their designation dates:
Newly included lineages, with designation date in parentheses
  • LF.7.1 (2024-10-19)
  • LF.7.1.1 (2024-10-19)
  • LF.7.2 (2024-10-19)
  • LF.7.2.1 (2024-10-19)
  • LF.7.3 (2024-10-19)
  • LF.7.4 (2024-10-19)
  • JN.1.49.3 (2024-10-20)
  • MV.2 (2024-10-20)
  • MB.1.1.2 (2024-10-20)
  • MB.1.1.3 (2024-10-20)
  • NA.1 (2024-10-20)
  • NA.1.1 (2024-10-20)
  • XDV.1.5.1 (2024-10-20)
  • NB.1 (2024-10-20)
  • KS.1.1.1 (2024-10-20)
  • KS.1.1.2 (2024-10-20)
  • LF.3.1.2 (2024-10-20)
  • XEL (2024-10-20)
  • NC.1 (2024-10-20)
  • ND.1 (2024-10-20)
  • ND.1.1 (2024-10-20)
  • ND.2 (2024-10-20)
  • ND.3 (2024-10-20)
  • MC.10.1 (2024-10-20)
  • KP.2.2.1 (2024-10-20)
  • KP.2.25.1 (2024-10-20)
  • KP.2.25.2 (2024-10-20)
  • KP.2.25.3 (2024-10-20)
  • MD.3.1.1 (2024-10-20)
  • MD.3.1.2 (2024-10-20)
  • MD.3.1.3 (2024-10-20)
  • MD.3.1.4 (2024-10-20)
  • MD.1.2 (2024-10-20)
  • MD.1.1.1 (2024-10-20)
  • KP.3.2.6 (2024-10-21)
  • MC.1.1 (2024-10-21)
  • MC.18 (2024-10-21)
  • KP.2.27 (2024-10-22)
  • KP.2.3.8 (2024-10-22)
  • KP.2.2.2 (2024-10-22)
  • XEM (2024-10-22)
  • KP.3.1.9 (2024-10-22)
  • KP.1.1.6 (2024-10-23)
  • NE.1 (2024-10-23)
  • XEN (2024-10-23)
  • NF.1 (2024-10-24)
  • KP.2.3.9 (2024-10-24)
  • NG.1 (2024-10-24)
  • NH.1 (2024-10-24)
  • NH.2 (2024-10-24)
  • NH.3 (2024-10-24)
  • JN.1.11.2 (2024-10-25)
  • NJ.1 (2024-10-25)
  • KP.2.3.10 (2024-10-25)
  • NK.1 (2024-10-25)
  • LP.5 (2024-10-25)
  • LP.6 (2024-10-25)
  • LP.7 (2024-10-25)
  • KP.2.3.11 (2024-10-25)
  • LD.2 (2024-10-25)
  • KP.3.1.10 (2024-10-25)
  • NL.1 (2024-10-25)
  • MU.2 (2024-10-25)
  • MU.2.1 (2024-10-25)
  • KP.3.7 (2024-10-25)
  • LZ.2.1.2 (2024-10-27)
  • LZ.2.1.1 (2024-10-27)
  • KR.1.4 (2024-10-27)
  • KP.2.3.12 (2024-10-27)
  • NM.1 (2024-10-27)
  • LP.8 (2024-10-27)
  • LP.7.1.2 (2024-10-27)
  • KP.4.2.5 (2024-10-27)
  • KP.4.2.4 (2024-10-27)
  • LF.7.1.2 (2024-10-27)
  • MC.19 (2024-11-01)
  • KP.2.6.1 (2024-11-01)
  • MC.20 (2024-11-01)
  • MC.10.2 (2024-11-01)
  • KP.3.2.7 (2024-11-01)
  • KP.3.2.8 (2024-11-01)
  • KP.3.2.9 (2024-11-01)
  • XEC.3 (2024-11-01)
  • XEC.4 (2024-11-01)
  • XEC.5 (2024-11-01)
  • XEC.6 (2024-11-01)
  • XEC.7 (2024-11-01)
  • MJ.2 (2024-11-05)
  • MJ.2.1 (2024-11-05)
  • MJ.2.1.1 (2024-11-05)
  • MJ.1.1 (2024-11-05)
  • LF.10 (2024-11-05)
  • LP.8.1 (2024-11-08)
  • LP.8.2 (2024-11-08)
  • LF.7.1.3 (2024-11-08)
  • NL.2 (2024-11-08)
  • NL.3 (2024-11-08)
  • NL.4 (2024-11-08)
  • NL.5 (2024-11-08)
  • NL.6 (2024-11-08)
  • NL.7 (2024-11-08)
  • NM.2 (2024-11-12)
  • LP.9 (2024-11-12)
  • LP.9.1 (2024-11-12)
  • NN.1 (2024-11-12)
  • NN.1.1 (2024-11-12)
  • NN.2 (2024-11-12)
  • LP.1.2.1 (2024-11-12)
  • NC.1.1 (2024-11-12)
  • NC.1.2 (2024-11-12)
  • LB.1.10 (2024-11-12)
  • NP.1 (2024-11-12)
  • NP.2 (2024-11-12)
  • XEP (2024-11-12)
  • MC.13.2 (2024-11-12)
  • MC.21 (2024-11-12)
  • MC.21.1 (2024-11-12)
  • MC.22 (2024-11-12)
  • XDY.1 (2024-11-12)
  • LP.10 (2024-11-12)
  • LP.10.1 (2024-11-12)
  • NQ.1 (2024-11-12)
  • NH.4 (2024-11-12)
  • MU.3 (2024-11-12)
  • KP.2.3.13 (2024-11-13)
  • MG.2 (2024-11-13)
  • MG.3 (2024-11-13)
  • MG.4 (2024-11-14)

SARS-CoV-2 (Mature proteins) (nextstrain/sars-cov-2/wuhan-hu-1/proteins)

  • Add newly designated Nextstrain clades 24H (LF.7) and 24I (MV.1)
  • Add all 128 Pango lineages newly designated between 2024-10-19 and 2024-11-14. Unfold below to see a list of all newly included lineages with their designation dates:
Newly included lineages, with designation date in parentheses
  • LF.7.1 (2024-10-19)
  • LF.7.1.1 (2024-10-19)
  • LF.7.2 (2024-10-19)
  • LF.7.2.1 (2024-10-19)
  • LF.7.3 (2024-10-19)
  • LF.7.4 (2024-10-19)
  • JN.1.49.3 (2024-10-20)
  • MV.2 (2024-10-20)
  • MB.1.1.2 (2024-10-20)
  • MB.1.1.3 (2024-10-20)
  • NA.1 (2024-10-20)
  • NA.1.1 (2024-10-20)
  • XDV.1.5.1 (2024-10-20)
  • NB.1 (2024-10-20)
  • KS.1.1.1 (2024-10-20)
  • KS.1.1.2 (2024-10-20)
  • LF.3.1.2 (2024-10-20)
  • XEL (2024-10-20)
  • NC.1 (2024-10-20)
  • ND.1 (2024-10-20)
  • ND.1.1 (2024-10-20)
  • ND.2 (2024-10-20)
  • ND.3 (2024-10-20)
  • MC.10.1 (2024-10-20)
  • KP.2.2.1 (2024-10-20)
  • KP.2.25.1 (2024-10-20)
  • KP.2.25.2 (2024-10-20)
  • KP.2.25.3 (2024-10-20)
  • MD.3.1.1 (2024-10-20)
  • MD.3.1.2 (2024-10-20)
  • MD.3.1.3 (2024-10-20)
  • MD.3.1.4 (2024-10-20)
  • MD.1.2 (2024-10-20)
  • MD.1.1.1 (2024-10-20)
  • KP.3.2.6 (2024-10-21)
  • MC.1.1 (2024-10-21)
  • MC.18 (2024-10-21)
  • KP.2.27 (2024-10-22)
  • KP.2.3.8 (2024-10-22)
  • KP.2.2.2 (2024-10-22)
  • XEM (2024-10-22)
  • KP.3.1.9 (2024-10-22)
  • KP.1.1.6 (2024-10-23)
  • NE.1 (2024-10-23)
  • XEN (2024-10-23)
  • NF.1 (2024-10-24)
  • KP.2.3.9 (2024-10-24)
  • NG.1 (2024-10-24)
  • NH.1 (2024-10-24)
  • NH.2 (2024-10-24)
  • NH.3 (2024-10-24)
  • JN.1.11.2 (2024-10-25)
  • NJ.1 (2024-10-25)
  • KP.2.3.10 (2024-10-25)
  • NK.1 (2024-10-25)
  • LP.5 (2024-10-25)
  • LP.6 (2024-10-25)
  • LP.7 (2024-10-25)
  • KP.2.3.11 (2024-10-25)
  • LD.2 (2024-10-25)
  • KP.3.1.10 (2024-10-25)
  • NL.1 (2024-10-25)
  • MU.2 (2024-10-25)
  • MU.2.1 (2024-10-25)
  • KP.3.7 (2024-10-25)
  • LZ.2.1.2 (2024-10-27)
  • LZ.2.1.1 (2024-10-27)
  • KR.1.4 (2024-10-27)
  • KP.2.3.12 (2024-10-27)
  • NM.1 (2024-10-27)
  • LP.8 (2024-10-27)
  • LP.7.1.2 (2024-10-27)
  • KP.4.2.5 (2024-10-27)
  • KP.4.2.4 (2024-10-27)
  • LF.7.1.2 (2024-10-27)
  • MC.19 (2024-11-01)
  • KP.2.6.1 (2024-11-01)
  • MC.20 (2024-11-01)
  • MC.10.2 (2024-11-01)
  • KP.3.2.7 (2024-11-01)
  • KP.3.2.8 (2024-11-01)
  • KP.3.2.9 (2024-11-01)
  • XEC.3 (2024-11-01)
  • XEC.4 (2024-11-01)
  • XEC.5 (2024-11-01)
  • XEC.6 (2024-11-01)
  • XEC.7 (2024-11-01)
  • MJ.2 (2024-11-05)
  • MJ.2.1 (2024-11-05)
  • MJ.2.1.1 (2024-11-05)
  • MJ.1.1 (2024-11-05)
  • LF.10 (2024-11-05)
  • LP.8.1 (2024-11-08)
  • LP.8.2 (2024-11-08)
  • LF.7.1.3 (2024-11-08)
  • NL.2 (2024-11-08)
  • NL.3 (2024-11-08)
  • NL.4 (2024-11-08)
  • NL.5 (2024-11-08)
  • NL.6 (2024-11-08)
  • NL.7 (2024-11-08)
  • NM.2 (2024-11-12)
  • LP.9 (2024-11-12)
  • LP.9.1 (2024-11-12)
  • NN.1 (2024-11-12)
  • NN.1.1 (2024-11-12)
  • NN.2 (2024-11-12)
  • LP.1.2.1 (2024-11-12)
  • NC.1.1 (2024-11-12)
  • NC.1.2 (2024-11-12)
  • LB.1.10 (2024-11-12)
  • NP.1 (2024-11-12)
  • NP.2 (2024-11-12)
  • XEP (2024-11-12)
  • MC.13.2 (2024-11-12)
  • MC.21 (2024-11-12)
  • MC.21.1 (2024-11-12)
  • MC.22 (2024-11-12)
  • XDY.1 (2024-11-12)
  • LP.10 (2024-11-12)
  • LP.10.1 (2024-11-12)
  • NQ.1 (2024-11-12)
  • NH.4 (2024-11-12)
  • MU.3 (2024-11-12)
  • KP.2.3.13 (2024-11-13)
  • MG.2 (2024-11-13)
  • MG.3 (2024-11-13)
  • MG.4 (2024-11-14)

SARS-CoV-2 (BA.2) (nextstrain/sars-cov-2/BA.2)

  • Add newly designated Nextstrain clades 24H (LF.7) and 24I (MV.1)
  • Add all 128 Pango lineages newly designated between 2024-10-19 and 2024-11-14. Unfold below to see a list of all newly included lineages with their designation dates:
Newly included lineages, with designation date in parentheses
  • LF.7.1 (2024-10-19)
  • LF.7.1.1 (2024-10-19)
  • LF.7.2 (2024-10-19)
  • LF.7.2.1 (2024-10-19)
  • LF.7.3 (2024-10-19)
  • LF.7.4 (2024-10-19)
  • JN.1.49.3 (2024-10-20)
  • MV.2 (2024-10-20)
  • MB.1.1.2 (2024-10-20)
  • MB.1.1.3 (2024-10-20)
  • NA.1 (2024-10-20)
  • NA.1.1 (2024-10-20)
  • XDV.1.5.1 (2024-10-20)
  • NB.1 (2024-10-20)
  • KS.1.1.1 (2024-10-20)
  • KS.1.1.2 (2024-10-20)
  • LF.3.1.2 (2024-10-20)
  • XEL (2024-10-20)
  • NC.1 (2024-10-20)
  • ND.1 (2024-10-20)
  • ND.1.1 (2024-10-20)
  • ND.2 (2024-10-20)
  • ND.3 (2024-10-20)
  • MC.10.1 (2024-10-20)
  • KP.2.2.1 (2024-10-20)
  • KP.2.25.1 (2024-10-20)
  • KP.2.25.2 (2024-10-20)
  • KP.2.25.3 (2024-10-20)
  • MD.3.1.1 (2024-10-20)
  • MD.3.1.2 (2024-10-20)
  • MD.3.1.3 (2024-10-20)
  • MD.3.1.4 (2024-10-20)
  • MD.1.2 (2024-10-20)
  • MD.1.1.1 (2024-10-20)
  • KP.3.2.6 (2024-10-21)
  • MC.1.1 (2024-10-21)
  • MC.18 (2024-10-21)
  • KP.2.27 (2024-10-22)
  • KP.2.3.8 (2024-10-22)
  • KP.2.2.2 (2024-10-22)
  • XEM (2024-10-22)
  • KP.3.1.9 (2024-10-22)
  • KP.1.1.6 (2024-10-23)
  • NE.1 (2024-10-23)
  • XEN (2024-10-23)
  • NF.1 (2024-10-24)
  • KP.2.3.9 (2024-10-24)
  • NG.1 (2024-10-24)
  • NH.1 (2024-10-24)
  • NH.2 (2024-10-24)
  • NH.3 (2024-10-24)
  • JN.1.11.2 (2024-10-25)
  • NJ.1 (2024-10-25)
  • KP.2.3.10 (2024-10-25)
  • NK.1 (2024-10-25)
  • LP.5 (2024-10-25)
  • LP.6 (2024-10-25)
  • LP.7 (2024-10-25)
  • KP.2.3.11 (2024-10-25)
  • LD.2 (2024-10-25)
  • KP.3.1.10 (2024-10-25)
  • NL.1 (2024-10-25)
  • MU.2 (2024-10-25)
  • MU.2.1 (2024-10-25)
  • KP.3.7 (2024-10-25)
  • LZ.2.1.2 (2024-10-27)
  • LZ.2.1.1 (2024-10-27)
  • KR.1.4 (2024-10-27)
  • KP.2.3.12 (2024-10-27)
  • NM.1 (2024-10-27)
  • LP.8 (2024-10-27)
  • LP.7.1.2 (2024-10-27)
  • KP.4.2.5 (2024-10-27)
  • KP.4.2.4 (2024-10-27)
  • LF.7.1.2 (2024-10-27)
  • MC.19 (2024-11-01)
  • KP.2.6.1 (2024-11-01)
  • MC.20 (2024-11-01)
  • MC.10.2 (2024-11-01)
  • KP.3.2.7 (2024-11-01)
  • KP.3.2.8 (2024-11-01)
  • KP.3.2.9 (2024-11-01)
  • XEC.3 (2024-11-01)
  • XEC.4 (2024-11-01)
  • XEC.5 (2024-11-01)
  • XEC.6 (2024-11-01)
  • XEC.7 (2024-11-01)
  • MJ.2 (2024-11-05)
  • MJ.2.1 (2024-11-05)
  • MJ.2.1.1 (2024-11-05)
  • MJ.1.1 (2024-11-05)
  • LF.10 (2024-11-05)
  • LP.8.1 (2024-11-08)
  • LP.8.2 (2024-11-08)
  • LF.7.1.3 (2024-11-08)
  • NL.2 (2024-11-08)
  • NL.3 (2024-11-08)
  • NL.4 (2024-11-08)
  • NL.5 (2024-11-08)
  • NL.6 (2024-11-08)
  • NL.7 (2024-11-08)
  • NM.2 (2024-11-12)
  • LP.9 (2024-11-12)
  • LP.9.1 (2024-11-12)
  • NN.1 (2024-11-12)
  • NN.1.1 (2024-11-12)
  • NN.2 (2024-11-12)
  • LP.1.2.1 (2024-11-12)
  • NC.1.1 (2024-11-12)
  • NC.1.2 (2024-11-12)
  • LB.1.10 (2024-11-12)
  • NP.1 (2024-11-12)
  • NP.2 (2024-11-12)
  • XEP (2024-11-12)
  • MC.13.2 (2024-11-12)
  • MC.21 (2024-11-12)
  • MC.21.1 (2024-11-12)
  • MC.22 (2024-11-12)
  • XDY.1 (2024-11-12)
  • LP.10 (2024-11-12)
  • LP.10.1 (2024-11-12)
  • NQ.1 (2024-11-12)
  • NH.4 (2024-11-12)
  • MU.3 (2024-11-12)
  • KP.2.3.13 (2024-11-13)
  • MG.2 (2024-11-13)
  • MG.3 (2024-11-13)
  • MG.4 (2024-11-14)

SARS-Co...

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Assets 7
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2024-11-05--09-19-52Z

05 Nov 09:20
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This release contains changes for datasets:

  • Influenza A H1N1pdm HA (nextstrain/flu/h1n1pdm/ha/CY121680)
  • Influenza A H1N1pdm HA (nextstrain/flu/h1n1pdm/ha/MW626062)
  • Influenza A H1N1pdm NA (nextstrain/flu/h1n1pdm/na/MW626056)
  • Influenza A H3N2 HA (nextstrain/flu/h3n2/ha/CY163680)
  • Influenza A H3N2 HA (nextstrain/flu/h3n2/ha/EPI1857216)
  • Influenza A H3N2 NA (nextstrain/flu/h3n2/na/EPI1857215)
  • Influenza B Victoria HA (nextstrain/flu/vic/ha/KX058884)
  • Influenza B Victoria NA (nextstrain/flu/vic/na/CY073894)
  • Yellow fever virus (YFV) prM-E region (nextstrain/yellow-fever/prM-E)
  • Orthomarburgvirus marburgense (community/genspectrum/marburg/HK1980/all-lineages)

Influenza A H1N1pdm HA (nextstrain/flu/h1n1pdm/ha/CY121680)

  • update reference trees
  • include subclade proposals

Influenza A H1N1pdm HA (nextstrain/flu/h1n1pdm/ha/MW626062)

  • update reference trees
  • include subclade proposals

Influenza A H1N1pdm NA (nextstrain/flu/h1n1pdm/na/MW626056)

  • update reference trees

Influenza A H3N2 HA (nextstrain/flu/h3n2/ha/CY163680)

  • update reference trees
  • include subclade proposals

Influenza A H3N2 HA (nextstrain/flu/h3n2/ha/EPI1857216)

  • update reference trees
  • include subclade proposals

Influenza A H3N2 NA (nextstrain/flu/h3n2/na/EPI1857215)

  • update reference trees

Influenza B Victoria HA (nextstrain/flu/vic/ha/KX058884)

  • update reference trees

Influenza B Victoria NA (nextstrain/flu/vic/na/CY073894)

  • update reference trees

Yellow fever virus (YFV) prM-E region (nextstrain/yellow-fever/prM-E)

Initial release of yellow fever virus (prM-E region only) dataset.

Orthomarburgvirus marburgense (community/genspectrum/marburg/HK1980/all-lineages)

First release of Marburg virus dataset.

Assets 12
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2024-10-17--16-48-48Z

17 Oct 16:49
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2024-10-17--16-48-48Z
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This release contains changes for datasets:

  • SARS-CoV-2 (nextstrain/sars-cov-2/wuhan-hu-1/orfs)
  • SARS-CoV-2 (Mature proteins) (nextstrain/sars-cov-2/wuhan-hu-1/proteins)
  • SARS-CoV-2 (BA.2) (nextstrain/sars-cov-2/BA.2)
  • SARS-CoV-2 (XBB) (nextstrain/sars-cov-2/XBB)
  • SARS-CoV-2 (BA.2.86) (nextstrain/sars-cov-2/BA.2.86)
  • DENV-1 (community/v-gen-lab/dengue/denv1)
  • DENV-2 (community/v-gen-lab/dengue/denv2)
  • DENV-3 (community/v-gen-lab/dengue/denv3)
  • DENV-4 (community/v-gen-lab/dengue/denv4)

SARS-CoV-2 (nextstrain/sars-cov-2/wuhan-hu-1/orfs)

  • Add newly designated Nextstrain clades 24F (XEC) and 24G (KP.2.3)
  • Add all 4 Pango lineages designated between 2024-09-26 and 2024-10-14. Unfold below to see a list of all newly included lineages with their designation dates:
Newly included lineages, with designation date in parentheses
  • XEH (2024-09-28)
  • XEJ (2024-09-28)
  • XEC.2 (2024-09-28)
  • XEK (2024-09-28)

SARS-CoV-2 (Mature proteins) (nextstrain/sars-cov-2/wuhan-hu-1/proteins)

  • Add newly designated Nextstrain clades 24F (XEC) and 24G (KP.2.3)
  • Add all 4 Pango lineages designated between 2024-09-26 and 2024-10-14. Unfold below to see a list of all newly included lineages with their designation dates:
Newly included lineages, with designation date in parentheses
  • XEH (2024-09-28)
  • XEJ (2024-09-28)
  • XEC.2 (2024-09-28)
  • XEK (2024-09-28)

SARS-CoV-2 (BA.2) (nextstrain/sars-cov-2/BA.2)

  • Add newly designated Nextstrain clades 24F (XEC) and 24G (KP.2.3)
  • Add all 4 Pango lineages designated between 2024-09-26 and 2024-10-14. Unfold below to see a list of all newly included lineages with their designation dates:
Newly included lineages, with designation date in parentheses
  • XEH (2024-09-28)
  • XEJ (2024-09-28)
  • XEC.2 (2024-09-28)
  • XEK (2024-09-28)

SARS-CoV-2 (XBB) (nextstrain/sars-cov-2/XBB)

  • Add newly designated Nextstrain clades 24F (XEC) and 24G (KP.2.3)
  • Add all 4 Pango lineages designated between 2024-09-26 and 2024-10-14. Unfold below to see a list of all newly included lineages with their designation dates:
Newly included lineages, with designation date in parentheses
  • XEH (2024-09-28)
  • XEJ (2024-09-28)
  • XEC.2 (2024-09-28)
  • XEK (2024-09-28)

SARS-CoV-2 (BA.2.86) (nextstrain/sars-cov-2/BA.2.86)

  • Add newly designated Nextstrain clades 24F (XEC) and 24G (KP.2.3)
  • Add all 4 Pango lineages designated between 2024-09-26 and 2024-10-14. Unfold below to see a list of all newly included lineages with their designation dates:
Newly included lineages, with designation date in parentheses
  • XEH (2024-09-28)
  • XEJ (2024-09-28)
  • XEC.2 (2024-09-28)
  • XEK (2024-09-28)

DENV-1 (community/v-gen-lab/dengue/denv1)

  • Update of the reference tree to avoid subclassification errors detected in other tools; We have added more representative sequences to some of the lineages.

DENV-2 (community/v-gen-lab/dengue/denv2)

  • Update of the reference tree to avoid subclassification errors detected in other tools; We have added more representative sequences to some of the lineages.

DENV-3 (community/v-gen-lab/dengue/denv3)

  • Update of the reference tree to avoid subclassification errors detected in other tools; We have added more representative sequences to some of the lineages.

DENV-4 (community/v-gen-lab/dengue/denv4)

  • Update of the reference tree to avoid subclassification errors detected in other tools; We have added more representative sequences to some of the lineages.
Assets 11
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2024-09-25--21-50-30Z

25 Sep 21:50
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2024-09-25--21-50-30Z
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2024-09-25--21-50-30Z

This release contains changes for datasets:

  • SARS-CoV-2 (nextstrain/sars-cov-2/wuhan-hu-1/orfs)
  • SARS-CoV-2 (Mature proteins) (nextstrain/sars-cov-2/wuhan-hu-1/proteins)
  • SARS-CoV-2 (BA.2) (nextstrain/sars-cov-2/BA.2)
  • SARS-CoV-2 (XBB) (nextstrain/sars-cov-2/XBB)
  • SARS-CoV-2 (BA.2.86) (nextstrain/sars-cov-2/BA.2.86)

SARS-CoV-2 (nextstrain/sars-cov-2/wuhan-hu-1/orfs)

  • Include newly designated Nextstrain clades 24D (XDV.1) and 24E (KP.3.1.1)
  • All 113 Pango lineages designated between 2024-07-15 and 2024-09-25 are now included, unfold below to see a list of all newly included lineages with their designation dates
Newly included lineages, with designation date in parentheses
  • XEC (2024-08-07)
  • KP.2.3.5 (2024-08-07)
  • KP.2.3.6 (2024-08-07)
  • LP.4 (2024-08-07)
  • LP.1.2 (2024-08-07)
  • LB.1.2.2 (2024-08-07)
  • LB.1.2.3 (2024-08-07)
  • KP.2.18 (2024-08-07)
  • KP.2.14.1 (2024-08-07)
  • MC.2 (2024-08-08)
  • MC.2.1 (2024-08-08)
  • KR.1.3 (2024-08-08)
  • MP.1 (2024-08-08)
  • MP.1.1 (2024-08-08)
  • JQ.2.1.2 (2024-08-08)
  • MC.4 (2024-08-08)
  • MC.3 (2024-08-08)
  • LB.1.3.3 (2024-08-08)
  • KP.2.15.1 (2024-08-08)
  • KP.3.1.7 (2024-08-08)
  • MQ.1 (2024-08-08)
  • MQ.2 (2024-08-08)
  • KP.3.3.4 (2024-08-08)
  • MR.1 (2024-08-08)
  • MK.3 (2024-08-08)
  • XED (2024-08-08)
  • LZ.2 (2024-08-12)
  • XEC.1 (2024-08-14)
  • MS.1 (2024-08-15)
  • KU.2.1 (2024-08-15)
  • KU.2.2 (2024-08-15)
  • MA.1.1 (2024-08-15)
  • MA.1.1.1 (2024-08-15)
  • JN.1.18.8 (2024-08-15)
  • JN.1.59.1 (2024-08-15)
  • JN.1.16.4 (2024-08-15)
  • LU.2.1 (2024-08-15)
  • LU.2.1.1 (2024-08-15)
  • MT.1 (2024-08-15)
  • KP.2.19 (2024-08-15)
  • LF.6 (2024-08-15)
  • LR.3 (2024-08-15)
  • XDV.1.1 (2024-08-15)
  • XDV.1.2 (2024-08-15)
  • XDV.1.2.1 (2024-08-15)
  • XDV.1.3 (2024-08-15)
  • XDV.1.4 (2024-08-15)
  • XDV.1.5 (2024-08-15)
  • XDV.1.6 (2024-08-15)
  • LF.7 (2024-08-15)
  • MU.1 (2024-08-15)
  • JN.1.4.9 (2024-08-15)
  • JN.1.38.1 (2024-08-15)
  • MC.5 (2024-08-15)
  • MC.6 (2024-08-15)
  • MC.7 (2024-08-15)
  • MC.8 (2024-08-15)
  • MC.8.1 (2024-08-15)
  • MC.9 (2024-08-15)
  • MC.10 (2024-08-15)
  • MC.11 (2024-08-15)
  • MC.11.1 (2024-08-15)
  • MC.12 (2024-08-15)
  • MC.13 (2024-08-15)
  • MC.13.1 (2024-08-15)
  • MC.14 (2024-08-15)
  • MC.15 (2024-08-15)
  • MC.16 (2024-08-15)
  • MB.1.1.1 (2024-08-15)
  • MV.1 (2024-08-15)
  • KP.2.20 (2024-08-15)
  • KP.2.20.1 (2024-08-15)
  • JN.1.67 (2024-08-15)
  • JN.1.67.1 (2024-08-15)
  • XEF (2024-08-15)
  • KP.2.22 (2024-08-16)
  • KP.2.24 (2024-08-16)
  • KP.2.25 (2024-08-16)
  • KP.2.26 (2024-08-16)
  • KR.4.1 (2024-08-16)
  • KP.6 (2024-08-16)
  • XEG (2024-08-16)
  • KP.2.3.7 (2024-08-16)
  • MW.1 (2024-08-16)
  • KP.2.23 (2024-08-16)
  • JN.1.68 (2024-08-16)
  • LF.8 (2024-08-16)
  • LF.8.1 (2024-08-16)
  • LF.8.1.1 (2024-08-16)
  • XEE (2024-08-16)
  • MC.17 (2024-08-16)
  • JN.1.16.5 (2024-08-16)
  • LW.1.1 (2024-08-16)
  • LW.1.2 (2024-08-16)
  • KP.3.6 (2024-08-16)
  • LB.1.9 (2024-08-16)
  • KP.3.1.8 (2024-08-16)
  • MY.1 (2024-08-16)
  • XDV.1.7 (2024-08-17)
  • XDV.1.8 (2024-08-17)
  • XDV.1.9 (2024-08-17)
  • XDR.1.1 (2024-08-17)
  • XDR.1.2 (2024-08-17)
  • XDV.1.10 (2024-08-17)
  • XDV.1.11 (2024-08-17)
  • LU.2.2 (2024-08-20)
  • LB.1.4.3 (2024-08-24)
  • LF.9 (2024-08-27)
  • LF.9.1 (2024-08-27)
  • XDV.1.7.1 (2024-09-05)
  • XDV.1.9.1 (2024-09-05)
  • LZ.2.1 (2024-09-05)
  • MZ.1 (2024-09-05)

SARS-CoV-2 (Mature proteins) (nextstrain/sars-cov-2/wuhan-hu-1/proteins)

  • Include newly designated Nextstrain clades 24D (XDV.1) and 24E (KP.3.1.1)
  • All 113 Pango lineages designated between 2024-07-15 and 2024-09-25 are now included, unfold below to see a list of all newly included lineages with their designation dates
Newly included lineages, with designation date in parentheses
  • XEC (2024-08-07)
  • KP.2.3.5 (2024-08-07)
  • KP.2.3.6 (2024-08-07)
  • LP.4 (2024-08-07)
  • LP.1.2 (2024-08-07)
  • LB.1.2.2 (2024-08-07)
  • LB.1.2.3 (2024-08-07)
  • KP.2.18 (2024-08-07)
  • KP.2.14.1 (2024-08-07)
  • MC.2 (2024-08-08)
  • MC.2.1 (2024-08-08)
  • KR.1.3 (2024-08-08)
  • MP.1 (2024-08-08)
  • MP.1.1 (2024-08-08)
  • JQ.2.1.2 (2024-08-08)
  • MC.4 (2024-08-08)
  • MC.3 (2024-08-08)
  • LB.1.3.3 (2024-08-08)
  • KP.2.15.1 (2024-08-08)
  • KP.3.1.7 (2024-08-08)
  • MQ.1 (2024-08-08)
  • MQ.2 (2024-08-08)
  • KP.3.3.4 (2024-08-08)
  • MR.1 (2024-08-08)
  • MK.3 (2024-08-08)
  • XED (2024-08-08)
  • LZ.2 (2024-08-12)
  • XEC.1 (2024-08-14)
  • MS.1 (2024-08-15)
  • KU.2.1 (2024-08-15)
  • KU.2.2 (2024-08-15)
  • MA.1.1 (2024-08-15)
  • MA.1.1.1 (2024-08-15)
  • JN.1.18.8 (2024-08-15)
  • JN.1.59.1 (2024-08-15)
  • JN.1.16.4 (2024-08-15)
  • LU.2.1 (2024-08-15)
  • LU.2.1.1 (2024-08-15)
  • MT.1 (2024-08-15)
  • KP.2.19 (2024-08-15)
  • LF.6 (2024-08-15)
  • LR.3 (2024-08-15)
  • XDV.1.1 (2024-08-15)
  • XDV.1.2 (2024-08-15)
  • XDV.1.2.1 (2024-08-15)
  • XDV.1.3 (2024-08-15)
  • XDV.1.4 (2024-08-15)
  • XDV.1.5 (2024-08-15)
  • XDV.1.6 (2024-08-15)
  • LF.7 (2024-08-15)
  • MU.1 (2024-08-15)
  • JN.1.4.9 (2024-08-15)
  • JN.1.38.1 (2024-08-15)
  • MC.5 (2024-08-15)
  • MC.6 (2024-08-15)
  • MC.7 (2024-08-15)
  • MC.8 (2024-08-15)
  • MC.8.1 (2024-08-15)
  • MC.9 (2024-08-15)
  • MC.10 (2024-08-15)
  • MC.11 (2024-08-15)
  • MC.11.1 (2024-08-15)
  • MC.12 (2024-08-15)
  • MC.13 (2024-08-15)
  • MC.13.1 (2024-08-15)
  • MC.14 (2024-08-15)
  • MC.15 (2024-08-15)
  • MC.16 (2024-08-15)
  • MB.1.1.1 (2024-08-15)
  • MV.1 (2024-08-15)
  • KP.2.20 (2024-08-15)
  • KP.2.20.1 (2024-08-15)
  • JN.1.67 (2024-08-15)
  • JN.1.67.1 (2024-08-15)
  • XEF (2024-08-15)
  • KP.2.22 (2024-08-16)
  • KP.2.24 (2024-08-16)
  • KP.2.25 (2024-08-16)
  • KP.2.26 (2024-08-16)
  • KR.4.1 (2024-08-16)
  • KP.6 (2024-08-16)
  • XEG (2024-08-16)
  • KP.2.3.7 (2024-08-16)
  • MW.1 (2024-08-16)
  • KP.2.23 (2024-08-16)
  • JN.1.68 (2024-08-16)
  • LF.8 (2024-08-16)
  • LF.8.1 (2024-08-16)
  • LF.8.1.1 (2024-08-16)
  • XEE (2024-08-16)
  • MC.17 (2024-08-16)
  • JN.1.16.5 (2024-08-16)
  • LW.1.1 (2024-08-16)
  • LW.1.2 (2024-08-16)
  • KP.3.6 (2024-08-16)
  • LB.1.9 (2024-08-16)
  • KP.3.1.8 (2024-08-16)
  • MY.1 (2024-08-16)
  • XDV.1.7 (2024-08-17)
  • XDV.1.8 (2024-08-17)
  • XDV.1.9 (2024-08-17)
  • XDR.1.1 (2024-08-17)
  • XDR.1.2 (2024-08-17)
  • XDV.1.10 (2024-08-17)
  • XDV.1.11 (2024-08-17)
  • LU.2.2 (2024-08-20)
  • LB.1.4.3 (2024-08-24)
  • LF.9 (2024-08-27)
  • LF.9.1 (2024-08-27)
  • XDV.1.7.1 (2024-09-05)
  • XDV.1.9.1 (2024-09-05)
  • LZ.2.1 (2024-09-05)
  • MZ.1 (2024-09-05)

SARS-CoV-2 (BA.2) (nextstrain/sars-cov-2/BA.2)

  • Include newly designated Nextstrain clades 24D (XDV.1) and 24E (KP.3.1.1)
  • All 113 Pango lineages designated between 2024-07-15 and 2024-09-25 are now included, unfold below to see a list of all newly included lineages with their designation dates
Newly included lineages, with designation date in parentheses
  • XEC (2024-08-07)
  • KP.2.3.5 (2024-08-07)
  • KP.2.3.6 (2024-08-07)
  • LP.4 (2024-08-07)
  • LP.1.2 (2024-08-07)
  • LB.1.2.2 (2024-08-07)
  • LB.1.2.3 (2024-08-07)
  • KP.2.18 (2024-08-07)
  • KP.2.14.1 (2024-08-07)
  • MC.2 (2024-08-08)
  • MC.2.1 (2024-08-08)
  • KR.1.3 (2024-08-08)
  • MP.1 (2024-08-08)
  • MP.1.1 (2024-08-08)
  • JQ.2.1.2 (2024-08-08)
  • MC.4 (2024-08-08)
  • MC.3 (2024-08-08)
  • LB.1.3.3 (2024-08-08)
  • KP.2.15.1 (2024-08-08)
  • KP.3.1.7 (2024-08-08)
  • MQ.1 (2024-08-08)
  • MQ.2 (2024-08-08)
  • KP.3.3.4 (2024-08-08)
  • MR.1 (2024-08-08)
  • MK.3 (2024-08-08)
  • XED (2024-08-08)
  • LZ.2 (2024-08-12)
  • XEC.1 (2024-08-14)
  • MS.1 (2024-08-15)
  • KU.2.1 (2024-08-15)
  • KU.2.2 (2024-08-15)
  • MA.1.1 (2024-08-15)
  • MA.1.1.1 (2024-08-15)
  • JN.1.18.8 (2024-08-15)
  • JN.1.59.1 (2024-08-15)
  • JN.1.16.4 (2024-08-15)
  • LU.2.1 (2024-08-15)
  • LU.2.1.1 (2024-08-15)
  • MT.1 (2024-08-15)
  • KP.2.19 (2024-08-15)
  • LF.6 (2024-08-15)
  • LR.3 (2024-08-15)
  • XDV.1.1 (2024-08-15)
  • XDV.1.2 (2024-08-15)
  • XDV.1.2.1 (2024-08-15)
  • XDV.1.3 (2024-08-15)
  • XDV.1.4 (2024-08-15)
  • XDV.1.5 (2024-08-15)
  • XDV.1.6 (2024-08-15)
  • LF.7 (2024-08-15)
  • MU.1 (2024-08-15)
  • JN.1.4.9 (2024-08-15)
  • JN.1.38.1 (2024-08-15)
  • MC.5 (2024-08-15)
  • MC.6 (2024-08-15)
  • MC.7 (2024-08-15)
  • MC.8 (2024-08-15)
  • MC.8.1 (2024-08-15)
  • MC.9 (2024-08-15)
  • MC.10 (2024-08-15)
  • MC.11 (2024-08-15)
  • MC.11.1 (2024-08-15)
  • MC.12 (2024-08-15)
  • MC.13 (2024-08-15)
  • MC.13.1 (2024-08-15)
  • MC.14 (2024-08-15)
  • MC.15 (2024-08-15)
  • MC.16 (2024-08-15)
  • MB.1.1.1 (2024-08-15)
  • MV.1 (2024-08-15)
  • KP.2.20 (2024-08-15)
  • KP.2.20.1 (2024-08-15)
  • JN.1.67 (2024-08-15)
  • JN.1.67.1 (2024-08-15)
  • XEF (2024-08-15)
  • KP.2.22 (2024-08-16)
  • KP.2.24 (2024-08-16)
  • KP.2.25 (2024-08-16)
  • KP.2.26 (2024-08-16)
  • KR.4.1 (2024-08-16)
  • KP.6 (2024-08-16)
  • XEG (2024-08-16)
  • KP.2.3.7 (2024-08-16)
  • MW.1 (2024-08-16)
  • KP.2.23 (2024-08-16)
  • JN.1.68 (2024-08-16)
  • LF.8 (2024-08-16)
  • LF.8.1 (2024-08-16)
  • LF.8.1.1 (2024-08-16)
  • XEE (2024-08-16)
  • MC.17 (2024-08-16)
  • JN.1.16.5 (2024-08-16)
  • LW.1.1 (2024-08-16)
  • LW.1.2 (2024-08-16)
  • KP.3.6 (2024-08-16)
  • LB.1.9 (2024-08-16)
  • KP.3.1.8 (2024-08-16)
  • MY.1 (2024-08-16)
  • XDV.1.7 (2024-08-17)
  • XDV.1.8 (2024-08-17)
  • XDV.1.9 (2024-08-17)
  • XDR.1.1 (2024-08-17)
  • XDR.1.2 (2024-08-17)
  • XDV.1.10 (2024-08-17)
  • XDV.1.11 (2024-08-17)
  • LU.2.2 (2024-08-20)
  • LB.1.4.3 (2024-08-24)
  • LF.9 (2024-08-27)
  • LF.9.1 (2024-08-27)
  • XDV.1.7.1 (2024-09-05)
  • XDV.1.9.1 (2024-09-05)
  • LZ.2.1 (2024-09-05)
  • MZ.1 (2024-09-05)

SARS-CoV-2 (XBB) (nextstrain/sars-cov-2/XBB)

  • Include newly designated Nextstrain clades 24D (XDV.1) and 24E (KP.3.1.1)
  • All 113 Pango lineages designated between 2024-07-15 and 2024-09-25 are now included, unfold below to see a list of all newly included lineages with their designation dates
Newly included lineages, with designation date in parentheses
  • XEC (2024-08-07)
  • KP.2.3.5 (2024-08-07)
  • KP.2.3.6 (2024-08-07)
  • LP.4 (2024-08-07)
  • LP.1.2 (2024-08-07)
  • LB.1.2.2 (2024-08-07)
  • LB.1.2.3 (2024-08-07)
  • KP.2.18 (2024-08-07)
  • KP.2.14.1 (2024-08-07)
  • MC.2 (2024-08-08)
  • MC.2.1 (2024-08-08)
  • KR.1.3 (2024-08-08)
  • MP.1 (2024-08-08)
  • MP.1.1 (2024-08-08)
  • JQ.2.1.2 (2024-08-08)
  • MC.4 (2024-08-08)
  • MC.3 (2024-08-08)
  • LB.1.3.3 (2024-08-08)
  • KP.2.15.1 (2024-08-08)
  • KP.3.1.7 (2024-08-08)
  • MQ.1 (2024-08-08)
  • MQ.2 (2024-08-08)
  • KP.3.3.4 ...
Read more
Assets 7
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2024-08-31--20-44-06Z

31 Aug 20:44
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This release contains changes for datasets:

  • DENV-1 (community/v-gen-lab/dengue/denv1)
  • DENV-2 (community/v-gen-lab/dengue/denv2)
  • DENV-3 (community/v-gen-lab/dengue/denv3)
  • DENV-4 (community/v-gen-lab/dengue/denv4)

DENV-1 (community/v-gen-lab/dengue/denv1)

Initial release of a DENV-1 dataset for Lineage classification!

Read more about Nextclade datasets in the documentation: https://docs.nextstrain.org/projects/nextclade/en/stable/user/datasets.html

DENV-2 (community/v-gen-lab/dengue/denv2)

Initial release of a DENV-2 dataset for Lineage classification!

Read more about Nextclade datasets in the documentation: https://docs.nextstrain.org/projects/nextclade/en/stable/user/datasets.html

DENV-3 (community/v-gen-lab/dengue/denv3)

Initial release of a DENV-3 dataset for Lineage classification!

Read more about Nextclade datasets in the documentation: https://docs.nextstrain.org/projects/nextclade/en/stable/user/datasets.html

DENV-4 (community/v-gen-lab/dengue/denv4)

Initial release of a DENV-4 dataset for Lineage classification!

Read more about Nextclade datasets in the documentation: https://docs.nextstrain.org/projects/nextclade/en/stable/user/datasets.html

Assets 6
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2024-08-27--21-28-04Z

27 Aug 21:28
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This release contains changes for datasets:

  • Mpox virus (All clades) (nextstrain/mpox/all-clades)

Mpox virus (All clades) (nextstrain/mpox/all-clades)

  • Clade Ia and clade Ib are now distinguished
  • Sequences shared via Genbank since 2024 have been added
Assets 3
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2024-08-08--05-08-21Z

08 Aug 05:08
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This release contains changes for datasets:

  • Influenza A H3N2 HA (nextstrain/flu/h3n2/ha/EPI1857216)

Influenza A H3N2 HA (nextstrain/flu/h3n2/ha/EPI1857216)

Fix numbering of RBD sites it the pathogen.json. The relevant positions were indexed 1-based, when they should have been indexed 0-based.

Assets 3
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