Upload data from fauna to S3 #59
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Upload data from fauna to S3 | |
| # Only support manual trigger of this workflow. | |
| on: | |
| workflow_dispatch: | |
| inputs: | |
| triggerPublic: | |
| description: "Trigger Nextstrain public builds" | |
| required: true | |
| type: boolean | |
| publicDockerImage: | |
| description: "Specific container image to use for Nextstrain public builds" | |
| required: false | |
| type: string | |
| triggerPrivateNextflu: | |
| description: "Trigger private Nextflu builds" | |
| required: true | |
| type: boolean | |
| privateNextfluDockerImage: | |
| description: "Specific container image to use for private Nextflu builds" | |
| required: false | |
| type: string | |
| jobs: | |
| upload: | |
| permissions: | |
| id-token: write | |
| uses: nextstrain/.github/.github/workflows/pathogen-repo-build.yaml@master | |
| secrets: inherit | |
| with: | |
| runtime: docker | |
| run: | | |
| nextstrain build \ | |
| --env AWS_ACCESS_KEY_ID \ | |
| --env AWS_SECRET_ACCESS_KEY \ | |
| --env RETHINK_AUTH_KEY \ | |
| --env RETHINK_HOST \ | |
| . \ | |
| -j 4 \ | |
| upload_all_titers \ | |
| upload_all_raw_sequences \ | |
| upload_all_sequences \ | |
| upload_all_metadata \ | |
| --configfile profiles/upload.yaml | |
| trigger-public-builds: | |
| needs: [upload] | |
| if: ${{ inputs.triggerPublic }} | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Trigger Nextstrain public builds | |
| run: | | |
| gh workflow run \ | |
| run-public-builds.yaml \ | |
| --repo nextstrain/seasonal-flu \ | |
| -f dockerImage=${{ github.event.inputs.publicDockerImage }} | |
| env: | |
| GITHUB_TOKEN: ${{ github.token }} | |
| trigger-private-nextflu-builds: | |
| needs: [upload] | |
| if: ${{ inputs.triggerPrivateNextflu }} | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Trigger private Nextflu builds | |
| run: | | |
| gh workflow run \ | |
| run-private-nextflu-builds.yaml \ | |
| --repo nextstrain/seasonal-flu \ | |
| -f dockerImage=${{ github.event.inputs.privateNextfluDockerImage }} | |
| env: | |
| GITHUB_TOKEN: ${{ github.token }} |