Merge pull request #200 from nextstrain/gishn-strains

annotate_metadata_with_gihsn: mark output as `temp()`
nextstrain · Dec 17, 2024 · 29a7eb7 · 29a7eb7
2 parents 20f74cf + 6dbe6c1
commit 29a7eb7
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/workflow/snakemake_rules/select_strains.smk b/workflow/snakemake_rules/select_strains.smk
@@ -77,7 +77,7 @@ rule annotate_metadata_with_gihsn:
     input:
         metadata="data/{lineage}/metadata_joined.tsv",
     output:
-        metadata="data/{lineage}/metadata_with_gihsn.tsv",
+        metadata=temp("data/{lineage}/metadata_with_gihsn.tsv"),
     conda: "../envs/nextstrain.yaml"
     benchmark:
         "benchmarks/annotate_metadata_with_gihsn_{lineage}.txt"