Add custom subclade colors for NA

Uses new script for creating custom color scales to add colors for each subtype's NA subclades. Only includes subclades for tips that have circulated since January 2023, so all other subclades appear as shades of gray.
nextstrain · Sep 19, 2023 · 6051063 · 6051063
1 parent 0c81c8a
commit 6051063
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Showing 3 changed files with 125 additions and 3 deletions.
diff --git a/profiles/nextflu-private/h1n1pdm/na/auspice_config.json b/profiles/nextflu-private/h1n1pdm/na/auspice_config.json
@@ -38,7 +38,53 @@
     {
       "key": "subclade",
       "title": "Subclade",
-      "type": "categorical"
+      "type": "categorical",
+      "scale": [
+        [
+          "B.3.1.1",
+          "#3F47C9"
+        ],
+        [
+          "B.3.1.2",
+          "#4274CE"
+        ],
+        [
+          "C",
+          "#4F97BB"
+        ],
+        [
+          "C.2",
+          "#64AC99"
+        ],
+        [
+          "C.3",
+          "#7EB976"
+        ],
+        [
+          "C.4",
+          "#9EBE5A"
+        ],
+        [
+          "C.5",
+          "#BEBB48"
+        ],
+        [
+          "C.5.1",
+          "#D9AE3E"
+        ],
+        [
+          "C.5.1.1",
+          "#E69036"
+        ],
+        [
+          "C.5.2",
+          "#E35F2D"
+        ],
+        [
+          "C.5.3",
+          "#DB2823"
+        ]
+      ]
     },
     {
       "key": "lbi",

diff --git a/profiles/nextflu-private/h3n2/na/auspice_config.json b/profiles/nextflu-private/h3n2/na/auspice_config.json
@@ -49,7 +49,37 @@
     {
       "key": "subclade",
       "title": "Subclade",
-      "type": "categorical"
+      "type": "categorical",
+      "scale": [
+        [
+          "A.2.2.2",
+          "#4272CE"
+        ],
+        [
+          "B",
+          "#58A2AC"
+        ],
+        [
+          "B.1.1",
+          "#7DB877"
+        ],
+        [
+          "B.2",
+          "#AEBD50"
+        ],
+        [
+          "B.2.2",
+          "#D8AE3E"
+        ],
+        [
+          "B.3",
+          "#E67A32"
+        ],
+        [
+          "B.4",
+          "#DB2823"
+        ]
+      ]
     },
     {
       "key": "lbi",

diff --git a/profiles/nextflu-private/vic/na/auspice_config.json b/profiles/nextflu-private/vic/na/auspice_config.json
@@ -31,7 +31,53 @@
     {
       "key": "subclade",
       "title": "Subclade",
-      "type": "categorical"
+      "type": "categorical",
+      "scale": [
+        [
+          "A",
+          "#3F47C9"
+        ],
+        [
+          "A.1.1.1",
+          "#4274CE"
+        ],
+        [
+          "A.1.1.3",
+          "#4F97BB"
+        ],
+        [
+          "A.1.2",
+          "#64AC99"
+        ],
+        [
+          "B",
+          "#7EB976"
+        ],
+        [
+          "B.1",
+          "#9EBE5A"
+        ],
+        [
+          "B.3",
+          "#BEBB48"
+        ],
+        [
+          "B.4",
+          "#D9AE3E"
+        ],
+        [
+          "B.5",
+          "#E69036"
+        ],
+        [
+          "B.6",
+          "#E35F2D"
+        ],
+        [
+          "B.7",
+          "#DB2823"
+        ]
+      ]
     },
     {
       "key": "lbi",