Update H3N2 and Vic titer references

nextstrain · Dec 10, 2024 · c2527cf · c2527cf
1 parent 9c79e77
commit c2527cf
Show file tree

Hide file tree

Showing 6 changed files with 11 additions and 10 deletions.
diff --git a/config/references_for_titer_plots/h3n2/cell_fra.txt b/config/references_for_titer_plots/h3n2/cell_fra.txt
@@ -5,10 +5,11 @@ A/Canberra/327/2023 # J.1.1:9N,275D
 A/Sydney/878/2023 # J.2
 A/Nevada/32/2023 # J.2
 A/Croatia/10136/RV/2023 # J.2:145N, vaccine strain
+A/Croatia/10136RV/2023 # J.2:145N, vaccine strain
 A/Victoria/2997/2023 # J.2:145N
 A/Victoria/488/2024 # J.2:158K,207R,227S
 A/Canberra/302/2023 # J.2:140R
-A/Colorado/6/2024 # J.2:79L,239S
+A/Colorado/6/2024 # J.2.1
 A/Oklahoma/5/2024 # J.2:158K
 A/DistrictOfColumbia/27/2023 # J.2:145N
 A/Victoria/979/2024 # J.2:65K,124N,145N,262N

diff --git a/config/references_for_titer_plots/h3n2/cell_hi.txt b/config/references_for_titer_plots/h3n2/cell_hi.txt
@@ -5,9 +5,10 @@ A/Colorado/6/2024 # J.2.1
 A/Sydney/878/2023 # J.2
 A/Canberra/302/2023 # J.2:140R
 A/Victoria/2997/2023 # J.2:145N
-A/Victoria/488/2024 # J.2:158K,207R,227S
 A/DistrictOfColumbia/27/2023 # J.2:145N
 A/Croatia/10136/RV/2023 # J.2:145N, vaccine strain
+A/Croatia/10136RV/2023 # J.2:145N, vaccine strain
+A/Victoria/488/2024 # J.2:158K,207R,227S
 A/Canberra/327/2023 # J.1.1:9N,275D
 A/Netherlands/10563/2023 # J.2.2:51V
 A/Perth/722/2024 # J.2.2:145N

diff --git a/config/references_for_titer_plots/h3n2/egg_fra.txt b/config/references_for_titer_plots/h3n2/egg_fra.txt
@@ -1,6 +1,7 @@
 A/Thailand/8/2022-egg # J, vaccine strain
 A/Wisconsin/90/2023-egg # J.2, HI
 A/Croatia/10136/RV/2023-egg # J.2:145N, vaccine strain
+A/Croatia/10136RV/2023-egg # J.2:145N, vaccine strain
 A/Canberra/302/2023-egg # J.2:140R,195Y
 A/Victoria/2997/2023-egg # J.2:145N,246K HI
 A/Lisbon/216/2023-egg # J.2:124N, HI
diff --git a/config/references_for_titer_plots/h3n2/egg_hi.txt b/config/references_for_titer_plots/h3n2/egg_hi.txt
@@ -3,6 +3,7 @@ A/Canberra/331/2023-egg # J.1.1:9N,138S,225G,275D
 A/Victoria/2997/2023-egg # J.2:145N,246K
 A/Canberra/309/2023-egg # J.2:140R,186N
 A/Croatia/10136/RV/2023-egg # J.2:145N, vaccine strain
+A/Croatia/10136RV/2023-egg # J.2:145N, vaccine strain
 A/Switzerland/8649/2023-egg # J.2:94K
 A/Lisbon/216/2023-egg # J.2.2:228T
 A/Canberra/373/2023-egg # J.2.2:145R,207R,228T
diff --git a/config/references_for_titer_plots/vic/cell_hi.txt b/config/references_for_titer_plots/vic/cell_hi.txt
@@ -1,9 +1,7 @@
 B/Austria/1359417/2021 # C, vaccine strain
+B/Utah/11/2023 # C.5.1
+B/Alabama/7/2023 # C.5.6
+B/Kanagawa/IC2360/2024 # C.5.6
 B/Lao/F4529/2023 # C.5.7
 B/Ranong/373/2023 # C.5.7
 B/Tokyo/23150/2023 # C.5.7
-B/Alabama/7/2023 # C.5.6
-B/Kanagawa/IC2360/2024 # C.5.6
-B/Utah/11/2023 # C.5.1
-B/Massachusetts/1/2021 # C.5
-B/Nepal/21FL2507/2021 # C.5
diff --git a/config/references_for_titer_plots/vic/egg_hi.txt b/config/references_for_titer_plots/vic/egg_hi.txt
@@ -1,5 +1,4 @@
 B/Austria/1359417/2021-egg # C, vaccine strain
-B/Tokyo/23150/2023-egg # C.5.7
-B/Kanagawa/IC2360/2024-egg # C.5.6
 B/Catalonia/2279261NS/2023-egg # C.5.1:128E
-B/Connecticut/1/2021-egg # C.5
+B/Kanagawa/IC2360/2024-egg # C.5.6
+B/Tokyo/23150/2023-egg # C.5.7