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Fixes the phylogenetic clean rule such that USVI data is not inadvert…
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…ently removed #38
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j23414 authored Feb 27, 2024
2 parents 86012b2 + 06ade1e commit 70a9f8c
Showing 1 changed file with 4 additions and 1 deletion.
5 changes: 4 additions & 1 deletion phylogenetic/Snakefile
Original file line number Diff line number Diff line change
Expand Up @@ -19,7 +19,10 @@ if "custom_rules" in config:
rule clean:
"""Removing directories: {params}"""
params:
"data ",
"data/metadata.tsv* ",
"data/sequences.fasta* ",
"data/metadata_all.tsv ",
"data/sequences_all.fasta ",
"results ",
"auspice"
shell:
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