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Fix automation hash #54

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merged 2 commits into from
Apr 8, 2024
Merged

Fix automation hash #54

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cdd071e
ingest-to-phylogenetic: tee hash for easy debugging
joverlee521 Apr 8, 2024
f615170
ingest-to-phylogenetic: Add AWS_DEFAULT_REGION
joverlee521 Apr 8, 2024
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4 changes: 3 additions & 1 deletion .github/workflows/ingest-to-phylogenetic.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -79,6 +79,8 @@ jobs:
steps:
- name: Get sha256sum
id: get-sha256sum
env:
AWS_DEFAULT_REGION: ${{ vars.AWS_DEFAULT_REGION }}
run: |
s3_urls=(
"s3://nextstrain-data/files/workflows/zika/metadata.tsv.zst"
Expand All @@ -96,7 +98,7 @@ jobs:
key="${s3path#*/}"

s3_hash="$(aws s3api head-object --no-sign-request --bucket "$bucket" --key "$key" --query Metadata.sha256sum --output text 2>/dev/null || echo "$no_hash")"
echo "${s3_hash}" >> ingest-output-sha256sum
echo "${s3_hash}" | tee -a ingest-output-sha256sum
done

- name: Check cache
Expand Down