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Pipeline Relase Version 1.0.4#56

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DSchreyer wants to merge 48 commits intomasternf-core/circdna:masterfrom devnf-core/circdna:devCopy head branch name to clipboard

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Commits

Commits on Jun 20, 2023

• Updated Dockerfile

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  committed
  f250381

• Removed versions

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  2204d2e

• Updates - Unsure what they were

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  616e157

Commits on Jun 23, 2023

• doesnt work

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  ef61377

Commits on Jun 26, 2023

• Fixed collect issue -> Immediate release in new pull request

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  fc81a30

• test

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  1c9f798

Commits on Jun 27, 2023

• Update, not working yet

  DSchreyer

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  32c4798

Commits on Jun 28, 2023

• updated to ampliconsuite-pipeline. Much work needed to finalise. Works until make_results_table

  DSchreyer

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  8ab10ae

Commits on Jul 3, 2023

• Updated modules

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  7c28c3c

• Updated test configs

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  884c0db

• Updated parameter requirements

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  cd3381c

• Updated ampliconarchitect tools to amplicon-suite pipeline

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  3542830

• Removed ampliconarchitect python scripts -> changed to ampliconsuite

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  f8a7ef6

• Removed due to depracation

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  c69d62d

• Updates

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  cd84761

• updates

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  f1e48a0

Commits on Jul 7, 2023

• Updated Tag

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  7483cbe

Commits on Jul 12, 2023

• Updated with new variables for ampliconarchitect modules

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  74cd8fe

• Fixes

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  032ea60

• Changed AA variable command

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  d015b5e

Commits on Jan 5, 2024

• Updates

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  9f2330a

Commits on Jan 6, 2024

• Updates on ampliconsuite, removed ampliconarchitect, not finished yet

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  9ee14eb

• Template update for nf-core/tools v2.11.1

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  0419286

• modules and subworkflows update to 2.11.2

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  4619740

Commits on Jan 7, 2024

• lib update

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  79d9f03

• updated gitignore

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  1657a11

• fix template change

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  06f0eb5

Commits on Jan 8, 2024

• updateto 1.19

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  1e7c398

• removed redundant scripts

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  327a531

• removed redundant scripts

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  d64f0c7

• added output directories and output for ampliconsuite

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  f85d6b2

• updated modules and multiqc

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  2fcd72e

• updated multiqc path

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  de09bcd

• remoced multiqc module

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  bb9c18e

Commits on Jan 9, 2024

• Updated ampliconsuite docker file and environment.yml

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  committed
  138e458

• updated ampliconsuite output

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  committed
  65bca09

• Updated Dockerfile and github workflow version push

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  47e4a88

• Updated dockerfile with procps

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  ec04c9f

• updated build-docker image

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  d7286d3

• updated ampliconsuite and implemented changes

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  c5c362c

• Updated dockerfile for ampliconsutie

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  cc888aa

• singularity update dockerbuild

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  7393761

• update to fit singularity

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  6375272

• Updated modules for ampliconclassifier

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  f2fce80

• updated modules

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  18246fe

• removed nf-core/multiqc

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  cea7a6e

• updated ampliconsuite documentation

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  f9a0f03

• updated changelog

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  af32e8c