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Update docs/output.md
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Co-authored-by: Matthias Hörtenhuber <[email protected]>
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nictru and mashehu authored Aug 6, 2024
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Expand Up @@ -118,7 +118,7 @@ The FastQC plots in this directory are generated relative to the raw, input read

</details>

`nf-core/circrna` will add the reference files to the output directory if `save_reference` is set to `true`. The resulting files, especially the aligner indices, can be used for speeding up future runs (if the `resume` option cannot be used). In order to achieve this, copy the indices to a location outside of the pipeline's output directory and provide the path to the indices via the corresponding aligner flags (check the [parameters documentation](https://nf-co.re/circrna/dev/parameters/#reference-genome-options) for more information).
`nf-core/circrna` will add the reference files to the output directory if `save_reference` is set to `true`. The resulting files, especially the aligner indices, can be used for speeding up future runs (if the `resume` option cannot be used). In order to achieve this, copy the indices to a location outside of the pipeline's output directory and provide the path to the indices via the corresponding aligner flags (check the [parameters documentation](https://nf-co.re/circrna/parameters/#reference-genome-options) for more information).

## Pipeline info

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