Merge pull request #24 from avani-bhojwani/dev

Update Trinity module and fix dependency issue
nf-core · Nov 28, 2024 · 8c968d4 · 8c968d4
2 parents 73ca200 + 493d9f5
commit 8c968d4
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -3,14 +3,21 @@
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
-## v1.1.0 - [2024-11-06]
+## v1.1.0 - [2024-11-28]
 
 Enhancements & fixes:
 
 - [PR #14](https://github.com/nf-core/denovotranscript/pull/14) - Template update for nf-core/tools v3.0.2
 - [PR #15](https://github.com/nf-core/denovotranscript/pull/15) - Fix logic for skip_assembly parameter
 - [PR #16](https://github.com/nf-core/denovotranscript/pull/16) - Increase resources for Trinity
 - [PR #19](https://github.com/nf-core/denovotranscript/pull/21) - Fix Salmon quantification when running in skip_assembly mode
+- [PR #24](https://github.com/nf-core/denovotranscript/pull/21) - Update Trinity module and fix dependency issue
+
+### Software dependencies
+
+| Dependency | Old version | New version |
+| ---------- | ----------- | ----------- |
+| `Trinity`  | 2.15.1      | 2.15.2      |
 
 ## v1.0.0 - [2024-08-15]
 

diff --git a/modules.json b/modules.json
@@ -71,9 +71,8 @@
                     },
                     "trinity": {
                         "branch": "master",
-                        "git_sha": "e06c5f45395d6e34531257b125d410a298a3bd4f",
-                        "installed_by": ["modules"],
-                        "patch": "modules/nf-core/trinity/trinity.diff"
+                        "git_sha": "05a2da2a077047c9d637bb71626c65b7e4fc04c3",
+                        "installed_by": ["modules"]
                     }
                 }
             },

diff --git a/modules/nf-core/trinity/environment.yml b/modules/nf-core/trinity/environment.yml
diff --git a/modules/nf-core/trinity/main.nf b/modules/nf-core/trinity/main.nf
diff --git a/modules/nf-core/trinity/meta.yml b/modules/nf-core/trinity/meta.yml
diff --git a/modules/nf-core/trinity/tests/main.nf.test b/modules/nf-core/trinity/tests/main.nf.test
diff --git a/modules/nf-core/trinity/tests/main.nf.test.snap b/modules/nf-core/trinity/tests/main.nf.test.snap