DSL2: Pull input files from reference sheet columns #2425

Job	Run time
Run pipeline with test data (23.04.0, -profile test,docker --preprocessing_tool fastp --preproces...	5m 16s
Run pipeline with test data (23.04.0, -profile test,docker --preprocessing_tool adapterremoval --...	3m 56s
Run pipeline with test data (23.04.0, -profile test,docker --mapping_tool bwamem --run_mapdamage_...	8m 40s
Run pipeline with test data (23.04.0, -profile test,docker --mapping_tool bowtie2)	5m 2s
Run pipeline with test data (23.04.0, -profile test,docker --skip_preprocessing)	4m 36s
Run pipeline with test data (23.04.0, -profile test_humanbam,docker --run_mtnucratio --run_contam...	8m 22s
Run pipeline with test data (23.04.0, -profile test_multiref,docker)	8m 37s
Run pipeline with test data (latest-everything, -profile test,docker --preprocessing_tool fastp -...	5m 7s
Run pipeline with test data (latest-everything, -profile test,docker --preprocessing_tool adapter...	4m 7s
Run pipeline with test data (latest-everything, -profile test,docker --mapping_tool bwamem --run_...	8m 37s
Run pipeline with test data (latest-everything, -profile test,docker --mapping_tool bowtie2)	4m 47s
Run pipeline with test data (latest-everything, -profile test,docker --skip_preprocessing)	4m 8s
Run pipeline with test data (latest-everything, -profile test_humanbam,docker --run_mtnucratio --...	8m 31s
Run pipeline with test data (latest-everything, -profile test_multiref,docker)	8m 44s
	1h 28m 30s

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