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Fixes to run in July 2022#152

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olgabot wants to merge 16 commits intodevnf-core/kmermaid:devfrom olgabot/2022-jul--dsl-fixesnf-core/kmermaid:olgabot/2022-jul--dsl-fixesCopy head branch name to clipboard

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Commits on Jul 8, 2022

• Fixes to run in July 2022

  Show description for 75e505e
  olgabot

  authored
  75e505e

• More set -> into

  olgabot

  authored
  a5818ee

• Use DSL2

  olgabot

  authored
  244d124

• only one item for set

  

  Olga Botvinnik

  committed
  8506cf0

• single ch_ksizes_for_compare

  

  Olga Botvinnik

  committed
  3ca0fc5

Commits on Sep 7, 2022

• Got up to sourmash sketch compute -- fixing 'No such variable: ch_reads_for_ribosomal_removal'

  

  Olga Botvinnik

  committed
  ae6e079

• Fixed ribosomal reads -- fixing 'No such variable: sourmash_sketches_nucleotide'

  

  Olga Botvinnik

  committed
  c0d9193

• seems to be running? -- fixing 'Missing process or function with name 'splitText''

  

  Olga Botvinnik

  committed
  43085c9

• seems to be running? -- fixing 'Missing process or function with name 'splitText''

  

  Olga Botvinnik

  committed
  0588e6b

• fastp seems to work, fixing Input of type '!'=27174

  Show description for 7e762a9
  

  Olga Botvinnik

  committed
  7e762a9

• seems to be running!!!

  

  Olga Botvinnik

  committed
  490cc60

• clean up some commented code

  

  Olga Botvinnik

  committed
  fcdb139

• change the item index to check file size of signature

  

  Olga Botvinnik

  committed
  1af3681

Commits on Sep 8, 2022

• Change default ksizes 21,30,51 -> 21,33,51 so that they are still odd for DNA

  

  Olga Botvinnik

  committed
  0e259e1

• Compute one signature per ksize

  

  Olga Botvinnik

  committed
  db86a6a

• Fix call to ksizes using "each"

  

  Olga Botvinnik

  committed
  f5c36ae