Skip to content

Issues: nf-core/mcmicro

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

23 Open 10 Closed
23 Open 10 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Add staging module for Imaging Mass Cytometry data enhancement Improvement for existing functionality
#68 opened Nov 6, 2024 by MargotCh
@MargotCh
Add option to skip registration. enhancement Improvement for existing functionality
#64 opened Oct 25, 2024 by kbestak
Implement Roadie for channel extraction enhancement Improvement for existing functionality
#62 opened Oct 25, 2024 by kbestak
@kbestak
Create proper test dataset for background subtraction enhancement Improvement for existing functionality
#59 opened Oct 8, 2024 by RobJY
1
Should registration output be published when tma_dearray is enabled? enhancement Improvement for existing functionality
#53 opened Aug 12, 2024 by jmuhlich
Add stardist into nf-core/mcmicro enhancement Improvement for existing functionality
#51 opened Aug 9, 2024 by migueLib
@migueLib
Expanding MCQuant nf-core module enhancement Improvement for existing functionality
#46 opened Jul 8, 2024 by LukasHats
@LukasHats
Add staging module for PhenoImager data enhancement Improvement for existing functionality
#45 opened Jul 5, 2024 by chiarasch
@chiarasch
Add Palom as a registration option
#44 opened Jul 2, 2024 by kbestak
5 tasks
@kbestak
Add a staging module for macsima data. enhancement Improvement for existing functionality
#40 opened Jun 26, 2024 by VictorDidier
@VictorDidier
Consider --illumination manual vs. checking for the presence of the dfp/ffp samplesheet columns enhancement Improvement for existing functionality
#38 opened May 20, 2024 by jmuhlich
Borrow ideas for how to design "restart" feature from sarek enhancement Improvement for existing functionality
#37 opened May 17, 2024 by jmuhlich
Module parameters enhancement Improvement for existing functionality
#36 opened May 13, 2024 by josenimo
Issues running Exemplar001 bug Something isn't working
#35 opened May 13, 2024 by josenimo
nf-validation isn't checking the files/directories in the samplesheets bug Something isn't working
#34 opened May 9, 2024 by RobJY
@RobJY
1
Mesmer in MacOS bug Something isn't working
#31 opened Apr 25, 2024 by josenimo
6
Design a mechanism to pass image pixel size to Mesmer and other tools bug Something isn't working
#30 opened Apr 24, 2024 by jmuhlich
5
input_sample code path does not explicitly sort input image filenames bug Something isn't working
#28 opened Apr 23, 2024 by jmuhlich
@RobJY
1
basicpy output should be split up by sample ID bug Something isn't working
#27 opened Apr 11, 2024 by jmuhlich
@RobJY
1
move custom validation to groovy enhancement Improvement for existing functionality
#25 opened Mar 19, 2024 by RobJY
@RobJY
4
add darkfield correction flag to default basicpy args enhancement Improvement for existing functionality
#21 opened Mar 18, 2024 by jmuhlich
@RobJY
Should markers.csv have a per-cycle channel number? enhancement Improvement for existing functionality
#17 opened Mar 15, 2024 by jmuhlich
read images and markers.csv from SampleSheet.csv
#6 opened Oct 16, 2023 by VictorDidier
@VictorDidier
ProTip! Follow long discussions with comments:>50.