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Feat/pb-fq2bammeth #451

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wants to merge 9 commits into from
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Feat/pb-fq2bammeth #451

wants to merge 9 commits into from

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sateeshperi
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@sateeshperi sateeshperi requested a review from a team as a code owner October 29, 2024 08:20
@sateeshperi sateeshperi requested a review from ewels October 29, 2024 08:20
@sateeshperi sateeshperi self-assigned this Oct 29, 2024
@sateeshperi sateeshperi added this to the 2.8.0 milestone Oct 29, 2024
@sateeshperi sateeshperi linked an issue Oct 29, 2024 that may be closed by this pull request
integrate parabricks/fq2bammeth module #447
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@sateeshperi sateeshperi changed the base branch from master to dev October 29, 2024 08:20
@nf-core nf-core deleted a comment from github-actions bot Oct 29, 2024
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github-actions bot commented Oct 29, 2024 •
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nf-core pipelines lint overall result: Passed ✅

Posted for pipeline commit 2d667d3

+| ✅ 199 tests passed       |+
#| ❔   4 tests were ignored |#

❔ Tests ignored:

✅ Tests passed:

Run details

  • nf-core/tools version 3.0.2
  • Run at 2024-11-13 05:35:45

@sateeshperi sateeshperi requested a review from GallVp November 4, 2024 12:06
GallVp
GallVp reviewed Nov 4, 2024
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GallVp reviewed Nov 4, 2024
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nextflow.config
@@ -216,6 +217,12 @@ profiles {
executor.cpus = 4
executor.memory = 8.GB
}
gpu {
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If the pipeline is started with this profile, the specified settings will be applied to every process.

I think we should apply these settings only to PARABRICKS_FQ2BAMMETH. Or am I missing something?

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closing in favor of bwameth standalone subworkflow

@sateeshperi sateeshperi deleted the feat/pb-fq2bammeth branch December 12, 2024 03:50
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@GallVp GallVp GallVp left review comments

@ewels ewels Awaiting requested review from ewels ewels is a code owner automatically assigned from nf-core/methylseq

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integrate parabricks/fq2bammeth module
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