port parabricks/indexgvcf to nf-test #17369
Triggered via pull request
November 18, 2024 10:16
famosab
Status
Cancelled
Total duration
3m 40s
Artifacts
–
test.yml
on: pull_request
Matrix: nf-test-gpu
Matrix: nf-test
Matrix: nf-core-lint-modules
Matrix: nf-core-lint-modules
Matrix: pytest
confirm-pass
0s
Annotations
8 errors and 4 warnings
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nf-core-lint-modules (parabricks/indexgvcf)
Process completed with exit code 1.
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nf-test (modules/nf-core/parabricks/indexgvcf, conda)
Process completed with exit code 1.
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nf-test-gpu (modules/nf-core/parabricks/applybqsr, docker_self_hosted, singularity)
Canceling since a higher priority waiting request for 'Run tests-6996' exists
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nf-test-gpu (modules/nf-core/parabricks/fq2bam, docker_self_hosted, singularity)
Canceling since a higher priority waiting request for 'Run tests-6996' exists
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nf-test-gpu (modules/nf-core/parabricks/fq2bammeth, docker_self_hosted, singularity)
Canceling since a higher priority waiting request for 'Run tests-6996' exists
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nf-test (modules/nf-core/parabricks/indexgvcf, docker_self_hosted)
Canceling since a higher priority waiting request for 'Run tests-6996' exists
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nf-test (modules/nf-core/parabricks/indexgvcf, singularity)
Canceling since a higher priority waiting request for 'Run tests-6996' exists
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confirm-pass
Process completed with exit code 1.
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nf-core-lint-modules (parabricks/indexgvcf)
Failed to restore: "/usr/bin/tar" failed with error: The process '/usr/bin/tar' failed with exit code 2
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nf-test (modules/nf-core/parabricks/indexgvcf, conda)
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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nf-test (modules/nf-core/parabricks/indexgvcf, docker_self_hosted)
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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nf-test (modules/nf-core/parabricks/indexgvcf, singularity)
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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