port parabricks/deepvariant to nf-test #17377
Triggered via pull request
November 18, 2024 10:26
famosab
Status
Failure
Total duration
2h 46m 0s
Artifacts
–
test.yml
on: pull_request
Matrix: nf-test-gpu
Matrix: nf-test
Matrix: nf-core-lint-modules
Matrix: nf-core-lint-modules
Matrix: pytest
confirm-pass
0s
Annotations
7 errors and 5 warnings
|
nf-test-gpu (modules/nf-core/parabricks/fq2bam, docker_self_hosted, singularity)
Process completed with exit code 1.
|
|
nf-test-gpu (modules/nf-core/parabricks/fq2bammeth, docker_self_hosted, singularity)
Process completed with exit code 1.
|
|
nf-test-gpu (modules/nf-core/parabricks/deepvariant, docker_self_hosted, singularity)
Process completed with exit code 1.
|
|
nf-test-gpu (modules/nf-core/parabricks/applybqsr, docker_self_hosted, singularity)
Process completed with exit code 1.
|
|
nf-test
The runner has received a shutdown signal. This can happen when the runner service is stopped, or a manually started runner is canceled.
|
|
nf-test
The operation was canceled.
|
|
confirm-pass
Process completed with exit code 1.
|
|
nf-test-gpu (modules/nf-core/parabricks/fq2bam, docker_self_hosted, singularity)
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
|
|
nf-test-gpu (modules/nf-core/parabricks/fq2bammeth, docker_self_hosted, singularity)
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
|
|
nf-test-gpu (modules/nf-core/parabricks/deepvariant, docker_self_hosted, singularity)
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
|
|
nf-test-gpu (modules/nf-core/parabricks/applybqsr, docker_self_hosted, singularity)
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
|
|
nf-test
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
|