improve workflow logic for `fastq_align_dedup_bismark` #17399

Job	Run time
pre-commit	36s
pre-commit	36s
pre-commit	36s
nf-test-changes	27s
nf-test-changes	27s
nf-test-changes	27s
editorconfig	16s
editorconfig	16s
editorconfig	16s
prettier	29s
prettier	29s
prettier	29s
pytest-changes	5s
pytest-changes	5s
pytest-changes	5s
pytest	0s
pytest	0s
pytest	0s
nf-core-lint-modules (fastq_align_dedup_bismark)	52s
nf-core-lint-modules (fastq_align_dedup_bismark)	52s
nf-core-lint-modules (fastq_align_dedup_bismark)	52s
nf-core-lint-modules	0s
nf-core-lint-modules	0s
nf-core-lint-modules	0s
nf-test-gpu	0s
nf-test-gpu	0s
nf-test-gpu	0s
nf-test (subworkflows/nf-core/fastq_align_dedup_bismark, conda)	13m 16s
nf-test (subworkflows/nf-core/fastq_align_dedup_bismark, conda)	13m 16s
nf-test (subworkflows/nf-core/fastq_align_dedup_bismark, conda)	13m 16s
nf-test (subworkflows/nf-core/fastq_align_dedup_bismark, docker_self_hosted)	7m 56s
nf-test (subworkflows/nf-core/fastq_align_dedup_bismark, docker_self_hosted)	8m 22s
nf-test (subworkflows/nf-core/fastq_align_dedup_bismark, docker_self_hosted)	6m 58s
nf-test (subworkflows/nf-core/fastq_align_dedup_bismark, singularity)	7m 40s
nf-test (subworkflows/nf-core/fastq_align_dedup_bismark, singularity)	7m 40s
nf-test (subworkflows/nf-core/fastq_align_dedup_bismark, singularity)	7m 40s
confirm-pass	9s
confirm-pass	1s
confirm-pass	1s
	1h 34m 30s

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