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fq lint module update: exit on failed validation #17409

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fq lint module update: exit on failed validation

fq lint module update: exit on failed validation #17409

Run time

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Job Run time
editorconfig
10s
nf-test-changes
1m 13s
prettier
29s
pytest-changes
5s
pre-commit
52s
pytest
0s
nf-core-lint-modules (fastq_qc_trim_filter_setstrandedness)
43s
nf-test-gpu (modules/nf-core/parabricks/applybqsr, docker_self_hosted, singularity)
50s
nf-core-lint-modules (fastq_align_dedup_bismark)
58s
nf-test-gpu (modules/nf-core/parabricks/fq2bam, docker_self_hosted, singularity)
49s
nf-core-lint-modules (fastq_fastqc_umitools_trimgalore)
52s
nf-test-gpu (modules/nf-core/parabricks/fq2bammeth, docker_self_hosted, singularity)
44s
nf-core-lint-modules (fastq_fastqc_umitools_fastp)
46s
nf-core-lint-modules (fastqc)
1m 3s
nf-core-lint-modules (trgt/genotype)
58s
nf-core-lint-modules (trgt/plot)
50s
nf-core-lint-modules (trgt/merge)
58s
nf-core-lint-modules (wittyer)
53s
nf-core-lint-modules (parabricks/applybqsr)
1m 0s
nf-core-lint-modules (parabricks/fq2bam)
50s
nf-test (subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness, conda)
3m 26s
nf-test (subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness, docker_self_hosted)
3m 6s
nf-test (subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness, singularity)
2m 17s
nf-test (subworkflows/nf-core/fastq_align_dedup_bismark, conda)
27m 54s
nf-test (subworkflows/nf-core/fastq_align_dedup_bismark, docker_self_hosted)
10m 5s
nf-test (subworkflows/nf-core/fastq_align_dedup_bismark, singularity)
8m 24s
nf-test (modules/nf-core/fastqc, conda)
9m 40s
nf-test (modules/nf-core/fastqc, docker_self_hosted)
6m 33s
nf-test (modules/nf-core/fastqc, singularity)
5m 31s
nf-test (modules/nf-core/trgt/genotype, conda)
6m 13s
nf-test (modules/nf-core/trgt/genotype, docker_self_hosted)
3m 21s
nf-test (modules/nf-core/trgt/genotype, singularity)
3m 38s
nf-test (modules/nf-core/trgt/plot, conda)
7m 15s
nf-test (modules/nf-core/trgt/plot, docker_self_hosted)
2m 16s
nf-test (modules/nf-core/trgt/plot, singularity)
1m 35s
nf-test (modules/nf-core/trgt/merge, conda)
7m 32s
nf-test (modules/nf-core/trgt/merge, docker_self_hosted)
3m 15s
nf-test (modules/nf-core/trgt/merge, singularity)
3m 18s
nf-test (subworkflows/nf-core/fastq_fastqc_umitools_trimgalore, conda)
12m 59s
nf-test (subworkflows/nf-core/fastq_fastqc_umitools_trimgalore, docker_self_hosted)
6m 22s
nf-test (subworkflows/nf-core/fastq_fastqc_umitools_trimgalore, singularity)
6m 55s
nf-test (subworkflows/nf-core/fastq_fastqc_umitools_fastp, conda)
21m 55s
nf-test (subworkflows/nf-core/fastq_fastqc_umitools_fastp, docker_self_hosted)
12m 4s
nf-test (subworkflows/nf-core/fastq_fastqc_umitools_fastp, singularity)
10m 34s
nf-test (modules/nf-core/wittyer, docker_self_hosted)
2m 52s
nf-test (modules/nf-core/wittyer, singularity)
2m 56s
confirm-pass
1s
3h 27m 0s