Skip to content
Run Linting

UMICollapse module: Drop external dependencies from UMICollapse module tests #486

Sign in to view logs

UMICollapse module: Drop external dependencies from UMICollapse module tests

UMICollapse module: Drop external dependencies from UMICollapse module tests #486

Triggered via pull request November 25, 2024 18:33
@MatthiasZepperMatthiasZepper
synchronize #7075
MatthiasZepper:nftest_umi_bams
Status Failure
Total duration 7m 1s
Artifacts –

lint.yml

on: pull_request
nf-core-changes
4s
nf-core-changes
pre-commit
9s
pre-commit
Matrix: nf-core lint modules
Matrix: nf-core lint subworkflows
confirm-pass
0s
confirm-pass
Fit to window
Zoom out
Zoom in

Annotations

11 errors and 1 warning
nf-core lint subworkflows (bam_dedup_stats_samtools_umicollapse/main.nf.test.snap)
Process completed with exit code 1.
nf-core lint subworkflows (bam_dedup_stats_samtools_umicollapse/main.nf.test)
Process completed with exit code 1.
nf-core lint subworkflows (bam_dedup_stats_samtools_umicollapse/paired-end-umis.config)
Process completed with exit code 1.
nf-core lint subworkflows (bam_dedup_stats_samtools_umitools/main.nf.test)
Process completed with exit code 1.
nf-core lint subworkflows (bam_dedup_stats_samtools_umitools/main.nf.test.snap)
Process completed with exit code 1.
nf-core lint modules (umicollapse/nextflow_PE.config)
Process completed with exit code 1.
nf-core lint modules (umicollapse/main.nf.test)
Process completed with exit code 1.
nf-core lint modules (umicollapse/main.nf.test.snap)
Process completed with exit code 1.
nf-core lint modules (umicollapse/nextflow_SE.config)
Process completed with exit code 1.
nf-core lint modules (umicollapse/nextflow.config)
Process completed with exit code 1.
confirm-pass
Process completed with exit code 1.
pre-commit
The `python-version` input is not set. The version of Python currently in `PATH` will be used.