add more code reviews :)

nf-core · Dec 11, 2024 · 70839c7 · 70839c7
1 parent 27f3867
commit 70839c7
Show file tree

Hide file tree

Showing 2 changed files with 10 additions and 10 deletions.
diff --git a/modules/nf-core/ampcombi2/parsetables/main.nf b/modules/nf-core/ampcombi2/parsetables/main.nf
@@ -40,15 +40,15 @@ process AMPCOMBI2_PARSETABLES {
 
     """
     ampcombi parse_tables \\
-     --path_list '${amp_input.collect { "${it}" }.join("' '")}' \\
-     --faa ${faa_input} \\
-     --gbk ${gbk_input} \\
-     --sample_list ${prefix} \\
-     --amp_database ${opt_amp_db} \\
-     ${db_dir} \\
-     ${interpro} \\
-     ${args} \\
-     --threads ${task.cpus}
+        --path_list '${amp_input.collect { "${it}" }.join("' '")}' \\
+        --faa ${faa_input} \\
+        --gbk ${gbk_input} \\
+        --sample_list ${prefix} \\
+        --amp_database ${opt_amp_db} \\
+        ${db_dir} \\
+        ${interpro} \\
+        ${args} \\
+        --threads ${task.cpus}
 
     cat <<-END_VERSIONS > versions.yml
     "${task.process}":

diff --git a/modules/nf-core/ampcombi2/parsetables/meta.yml b/modules/nf-core/ampcombi2/parsetables/meta.yml
@@ -63,7 +63,7 @@ input:
         pattern: "path/to/amp_*_database"
   - - opt_interproscan:
         type: directory
-        description:  A path to the file corresponding to the respective tsv files containing the protein classifications of the annotated CDSs. The file must be the raw output from InterProScan.
+        description: A path to a file corresponding to the respective tsv files containing protein classifications of the annotated CDSs. The file must be the raw output from InterProScan.
         pattern: "*.tsv"
 output:
   - sample_dir: