docker.userEmulation false

nf-core · Dec 12, 2024 · a22a0b5 · a22a0b5
1 parent af405c4
commit a22a0b5
Showing 1 changed file with 1 addition and 60 deletions.
diff --git a/tests/config/nf-test.config b/tests/config/nf-test.config
@@ -8,58 +8,29 @@ params {
 process {
     resourceLimits = [
         cpus: 2,
-        memory: '3.GB',
+        memory: '4.GB',
         time: '1.h'
     ]
 }
 
 profiles {
-    debug {
-        dumpHashes              = true
-        process.beforeScript    = 'echo $HOSTNAME'
-        cleanup                 = false
-        nextflow.enable.configProcessNamesValidation = true
-    }
     conda {
         conda.enabled           = true
-        docker.enabled          = false
-        singularity.enabled     = false
-        podman.enabled          = false
-        shifter.enabled         = false
-        charliecloud.enabled    = false
         conda.channels          = ['conda-forge', 'bioconda']
         apptainer.enabled       = false
     }
     mamba {
         conda.enabled           = true
         conda.useMamba          = true
-        docker.enabled          = false
-        singularity.enabled     = false
-        podman.enabled          = false
-        shifter.enabled         = false
-        charliecloud.enabled    = false
-        apptainer.enabled       = false
     }
     docker {
         docker.enabled          = true
-        conda.enabled           = false
-        singularity.enabled     = false
-        podman.enabled          = false
-        shifter.enabled         = false
-        charliecloud.enabled    = false
-        apptainer.enabled       = false
         docker.runOptions       = '-u $(id -u):$(id -g) --platform=linux/amd64'
     }
     docker_self_hosted {
         docker.enabled          = true
         docker.userEmulation    = false
         docker.fixOwnership     = true
-        conda.enabled           = false
-        singularity.enabled     = false
-        podman.enabled          = false
-        shifter.enabled         = false
-        charliecloud.enabled    = false
-        apptainer.enabled       = false
         docker.runOptions       = '-u $(id -u):$(id -g) --platform=linux/amd64'
     }
     arm {
@@ -68,50 +39,20 @@ profiles {
     singularity {
         singularity.enabled     = true
         singularity.autoMounts  = true
-        conda.enabled           = false
-        docker.enabled          = false
-        podman.enabled          = false
-        shifter.enabled         = false
-        charliecloud.enabled    = false
-        apptainer.enabled       = false
     }
     podman {
         podman.enabled          = true
-        conda.enabled           = false
-        docker.enabled          = false
-        singularity.enabled     = false
-        shifter.enabled         = false
-        charliecloud.enabled    = false
-        apptainer.enabled       = false
         podman.runOptions       = "--runtime crun --platform linux/x86_64 --systemd=always"
     }
     shifter {
         shifter.enabled         = true
-        conda.enabled           = false
-        docker.enabled          = false
-        singularity.enabled     = false
-        podman.enabled          = false
-        charliecloud.enabled    = false
-        apptainer.enabled       = false
     }
     charliecloud {
         charliecloud.enabled    = true
-        conda.enabled           = false
-        docker.enabled          = false
-        singularity.enabled     = false
-        podman.enabled          = false
-        shifter.enabled         = false
-        apptainer.enabled       = false
     }
     apptainer {
         apptainer.enabled       = true
         apptainer.autoMounts    = true
-        conda.enabled           = false
-        docker.enabled          = false
-        singularity.enabled     = false
-        podman.enabled          = false
-        shifter.enabled         = false
-        charliecloud.enabled    = false
     }
     wave {
         apptainer.ociAutoPull   = true