Updated snapshots

nf-core · Aug 27, 2024 · dca715d · dca715d
1 parent 44f91bb
commit dca715d
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Showing 3 changed files with 23 additions and 42 deletions.
diff --git a/subworkflows/nf-core/fastq_bwa_mem_samblaster/main.nf b/subworkflows/nf-core/fastq_bwa_mem_samblaster/main.nf
@@ -7,6 +7,7 @@ workflow FASTQ_BWA_MEM_SAMBLASTER {
     take:
     ch_fastq                // channel: [ val(meta), [ fq ] ]; meta ~ [ id: 'sample' ]
     ch_reference            // channel: [ val(meta2), fasta, index ]; fasta | index; meta2 ~ [ id: 'genome' ]
+                            // Each item from ch_fastq is combined with each item from ch_reference
 
     main:
     ch_versions             = Channel.empty()

diff --git a/subworkflows/nf-core/fastq_bwa_mem_samblaster/tests/main.nf.test b/subworkflows/nf-core/fastq_bwa_mem_samblaster/tests/main.nf.test
@@ -36,8 +36,12 @@ nextflow_workflow {
 
         then {
             assertAll(
-                { assert workflow.success},
-                { assert snapshot(workflow.out).match()}
+                { assert workflow.success },
+                { assert snapshot(
+                    bam(workflow.out.bam[0][1]).getReadsMD5(),
+                    workflow.out.versions
+                    ).match()
+                }
             )
         }
     }
@@ -67,8 +71,8 @@ nextflow_workflow {
 
         then {
             assertAll(
-                { assert workflow.success},
-                { assert snapshot(workflow.out).match()}
+                { assert workflow.success },
+                { assert snapshot(workflow.out).match() }
             )
         }
     }

diff --git a/subworkflows/nf-core/fastq_bwa_mem_samblaster/tests/main.nf.test.snap b/subworkflows/nf-core/fastq_bwa_mem_samblaster/tests/main.nf.test.snap
@@ -1,42 +1,18 @@
 {
     "sarscov2-fq-gz": {
         "content": [
-            {
-                "0": [
-                    [
-                        {
-                            "id": "test",
-                            "ref_id": "genome"
-                        },
-                        "test.on.genome.samblaster.bam:md5,8c47b2669f5250ad2d24365b42566d78"
-                    ]
-                ],
-                "1": [
-                    "versions.yml:md5,3b59736950270bca59c29afeb5289b4f",
-                    "versions.yml:md5,46f2d5384c2b4c6111293bc8642cc43a",
-                    "versions.yml:md5,6a2baa7f2d1d555fe604e451624f414b"
-                ],
-                "bam": [
-                    [
-                        {
-                            "id": "test",
-                            "ref_id": "genome"
-                        },
-                        "test.on.genome.samblaster.bam:md5,8c47b2669f5250ad2d24365b42566d78"
-                    ]
-                ],
-                "versions": [
-                    "versions.yml:md5,3b59736950270bca59c29afeb5289b4f",
-                    "versions.yml:md5,46f2d5384c2b4c6111293bc8642cc43a",
-                    "versions.yml:md5,6a2baa7f2d1d555fe604e451624f414b"
-                ]
-            }
+            "7cf71131809f63c5c05c767742ed70ff",
+            [
+                "versions.yml:md5,3b59736950270bca59c29afeb5289b4f",
+                "versions.yml:md5,80949a94ee1be8238b1c79d89ed9fa83",
+                "versions.yml:md5,ddd810edeee1008ec55b628e3a9d6204"
+            ]
         ],
         "meta": {
             "nf-test": "0.8.4",
-            "nextflow": "23.10.1"
+            "nextflow": "24.04.4"
         },
-        "timestamp": "2024-05-03T15:58:33.221762"
+        "timestamp": "2024-08-28T09:36:34.757275"
     },
     "sarscov2-fq-gz-stub": {
         "content": [
@@ -52,8 +28,8 @@
                 ],
                 "1": [
                     "versions.yml:md5,3b59736950270bca59c29afeb5289b4f",
-                    "versions.yml:md5,46f2d5384c2b4c6111293bc8642cc43a",
-                    "versions.yml:md5,6a2baa7f2d1d555fe604e451624f414b"
+                    "versions.yml:md5,80949a94ee1be8238b1c79d89ed9fa83",
+                    "versions.yml:md5,ddd810edeee1008ec55b628e3a9d6204"
                 ],
                 "bam": [
                     [
@@ -66,15 +42,15 @@
                 ],
                 "versions": [
                     "versions.yml:md5,3b59736950270bca59c29afeb5289b4f",
-                    "versions.yml:md5,46f2d5384c2b4c6111293bc8642cc43a",
-                    "versions.yml:md5,6a2baa7f2d1d555fe604e451624f414b"
+                    "versions.yml:md5,80949a94ee1be8238b1c79d89ed9fa83",
+                    "versions.yml:md5,ddd810edeee1008ec55b628e3a9d6204"
                 ]
             }
         ],
         "meta": {
             "nf-test": "0.8.4",
-            "nextflow": "23.10.1"
+            "nextflow": "24.04.4"
         },
-        "timestamp": "2024-05-03T16:03:28.825915"
+        "timestamp": "2024-08-28T09:36:42.43377"
     }
 }