fix meta info

nf-core · Nov 17, 2024 · e633cde · e633cde
1 parent 64cadad
commit e633cde
Showing 1 changed file with 67 additions and 67 deletions.
diff --git a/modules/nf-core/mgikit/demultipex/meta.yml b/modules/nf-core/mgikit/demultipex/meta.yml
@@ -14,108 +14,108 @@ input:
   - - meta:
         type: map
         description: |
-            Groovy Map containing sample information
-            e.g. [ id:'test', single_end:false ]
+          Groovy Map containing sample information
+          e.g. [ id:'test', single_end:false ]
     - samplesheet:
         type: file
         description: "Input samplesheet"
         pattern: "*.{csv}"
     - run_dir:
         type: file
         description: |
-            Input run directory containing BioInfo.csv and fastq data.
-            fastq files should be in MGI format and can be either single or paired end.
+          Input run directory containing BioInfo.csv and fastq data.
+          fastq files should be in MGI format and can be either single or paired end.
 output:
   - fastq:
       - meta:
-            type: map
-            description: |
-                Groovy Map containing sample information
-                e.g. [ id:'test', single_end:false ]
+          type: map
+          description: |
+            Groovy Map containing sample information
+            e.g. [ id:'test', single_end:false ]
       - "*.fastq.gz":
-            type: file
-            description: Demultiplexed sample FASTQ files
-            pattern: "*.fastq.gz"
+          type: file
+          description: Demultiplexed sample FASTQ files
+          pattern: "*.fastq.gz"
   - undetermined:
       - meta:
-            type: map
-            description: |
-                Groovy Map containing sample information
-                e.g. [ id:'test', single_end:false ]
+          type: map
+          description: |
+            Groovy Map containing sample information
+            e.g. [ id:'test', single_end:false ]
       - "Undetermined*.fastq.gz":
-            type: file
-            description: Optional undetermined sample FASTQ files
-            pattern: "Undetermined*.fastq.gz"
+          type: file
+          description: Optional undetermined sample FASTQ files
+          pattern: "Undetermined*.fastq.gz"
   - ambiguous:
       - meta:
-            type: map
-            description: |
-                Groovy Map containing sample information
-                e.g. [ id:'test', single_end:false ]
+          type: map
+          description: |
+            Groovy Map containing sample information
+            e.g. [ id:'test', single_end:false ]
       - "Ambiguous*.fastq.gz":
-            type: file
-            description: Optional ambiguous sample FASTQ files
-            pattern: "Ambiguous*.fastq.gz"
+          type: file
+          description: Optional ambiguous sample FASTQ files
+          pattern: "Ambiguous*.fastq.gz"
   - undetermined_reports:
       - meta:
-            type: map
-            description: |
-                Groovy Map containing sample information
-                e.g. [ id:'test', single_end:false ]
+          type: map
+          description: |
+            Groovy Map containing sample information
+            e.g. [ id:'test', single_end:false ]
       - "*mgikit.undetermined_barcode*":
-            type: file
-            description: Optional undetermined barcodes (complete and top 20 frequent barcodes).
-            pattern: "*mgikit.undetermined_barcode*"
+          type: file
+          description: Optional undetermined barcodes (complete and top 20 frequent barcodes).
+          pattern: "*mgikit.undetermined_barcode*"
   - ambiguous_reports:
       - meta:
-            type: map
-            description: |
-                Groovy Map containing sample information
-                e.g. [ id:'test', single_end:false ]
+          type: map
+          description: |
+            Groovy Map containing sample information
+            e.g. [ id:'test', single_end:false ]
       - "*mgikit.ambiguous_barcode*":
-            type: file
-            description: Optional ambiguous barcodes (complete and top 20 frequent barcodes).
-            pattern: "*mgikit.ambiguous_barcode*"
+          type: file
+          description: Optional ambiguous barcodes (complete and top 20 frequent barcodes).
+          pattern: "*mgikit.ambiguous_barcode*"
   - general_info_reports:
       - meta:
-            type: map
-            description: |
-                Groovy Map containing sample information
-                e.g. [ id:'test', single_end:false ]
+          type: map
+          description: |
+            Groovy Map containing sample information
+            e.g. [ id:'test', single_end:false ]
       - "*mgikit.general":
-            type: file
-            description: information on reads count and quality per sample.
-            pattern: "*mgikit.general"
+          type: file
+          description: information on reads count and quality per sample.
+          pattern: "*mgikit.general"
   - index_reports:
       - meta:
-            type: map
-            description: |
-                Groovy Map containing sample information
-                e.g. [ id:'test', single_end:false ]
+          type: map
+          description: |
+            Groovy Map containing sample information
+            e.g. [ id:'test', single_end:false ]
       - "*mgikit.info":
-            type: file
-            description: Index information per sample.
-            pattern: "*mgikit.info"
+          type: file
+          description: Index information per sample.
+          pattern: "*mgikit.info"
   - sample_stat_reports:
       - meta:
-            type: map
-            description: |
-                Groovy Map containing sample information
-                e.g. [ id:'test', single_end:false ]
+          type: map
+          description: |
+            Groovy Map containing sample information
+            e.g. [ id:'test', single_end:false ]
       - "*mgikit.sample_stats":
-            type: file
-            description: Sample stats containing information on reads count and quality per sample.
-            pattern: "*mgikit.sample_stats"
+          type: file
+          description: Sample stats containing information on reads count and quality per sample.
+          pattern: "*mgikit.sample_stats"
   - qc_reports:
       - meta:
-            type: map
-            description: |
-                Groovy Map containing sample information
-                e.g. [ id:'test', single_end:false ]
+          type: map
+          description: |
+            Groovy Map containing sample information
+            e.g. [ id:'test', single_end:false ]
       - "mgikit.{info,general,ambiguous_barcode,undetermined_barcode}":
-            type: file
-            description: Demultiplexing Quality Reports
-            pattern: "mgikit.{info,general,ambiguous_barcode,undetermined_barcode}"
+          type: file
+          description: Demultiplexing Quality Reports
+          pattern: "mgikit.{info,general,ambiguous_barcode,undetermined_barcode}"
   - versions:
     type: file
     description: File containing software versions