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fix vcf2db: add missing dependencies #7217

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merged 2 commits into from
Dec 13, 2024
+6 −2
Merged

fix vcf2db: add missing dependencies #7217

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040b81b
fix vcf2db: add missing dependencies
matthdsm Dec 13, 2024
481ec0a
Merge branch 'master' into fix/vcf2db
matthdsm Dec 13, 2024
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4 changes: 4 additions & 0 deletions modules/nf-core/vcf2db/environment.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -6,6 +6,10 @@ channels:
dependencies:
# renovate: datasource=conda depName=conda-forge/python
- conda-forge::python=2.7
# renovate: datasource=conda depName=conda-forge/python-snappy
- conda-forge::python-snappy=0.5.4
# renovate: datasource=conda depName=conda-forge/snappy
- conda-forge::snappy=1.1.8
# renovate: datasource=conda depName=bioconda/cyvcf2
- bioconda::cyvcf2=0.20.9
# renovate: datasource=conda depName=bioconda/vcf2db
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4 changes: 2 additions & 2 deletions modules/nf-core/vcf2db/main.nf
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Expand Up @@ -5,8 +5,8 @@ process VCF2DB {
// WARN: Version information not provided by tool on CLI. Please update version string below when bumping container versions.
conda "${moduleDir}/environment.yml"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/14/14d1257c98f789e23a888e2961673b5b98d89e4d03e6a3efba2b1134ed439f61/data':
'community.wave.seqera.io/library/python_vcf2db:91f604106ada5cf2' }"
'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/30/3013992b36b50c203acfd01b000d37f3753aee640238f6dd39d5e47f58e54d98/data':
'community.wave.seqera.io/library/python_python-snappy_snappy_cyvcf2_vcf2db:9c1d7f361187f21a' }"

input:
tuple val(meta), path(vcf), path(ped)
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