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Molkartqc hotfix #51

Merged
merged 2 commits into from
Jan 8, 2024
Merged

Molkartqc hotfix #51

merged 2 commits into from
Jan 8, 2024

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FloWuenne
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PR checklist

This PR fixes a bug in maskfilter, in which the number of filtered cells were not calculated correctly because the mask itself was used rather than a list of cells.

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/molkart branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

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github-actions bot commented Jan 8, 2024 •
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nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit c0a4b43

+| ✅ 162 tests passed       |+
!| ❗   9 tests had warnings |!

❗ Test warnings:

  • readme - README contains the placeholder zenodo.XXXXXXX. This should be replaced with the zenodo doi (after the first release).
  • pipeline_todos - TODO string in README.md: Add citation for pipeline after first release. Uncomment lines below and update Zenodo doi and badge at the top of this file.
  • pipeline_todos - TODO string in main.nf.test: Once you have added the required tests, please run the following command to build this file:
  • pipeline_todos - TODO string in methods_description_template.yml: #Update the HTML below to your preferred methods description, e.g. add publication citation for this pipeline
  • pipeline_todos - TODO string in ci.yml: You can customise CI pipeline run tests as required
  • pipeline_todos - TODO string in awsfulltest.yml: You can customise AWS full pipeline tests as required
  • pipeline_todos - TODO string in WorkflowMain.groovy: Add Zenodo DOI for pipeline after first release
  • pipeline_todos - TODO string in base.config: Check the defaults for all processes
  • pipeline_todos - TODO string in base.config: Customise requirements for specific processes.

✅ Tests passed:

Run details

  • nf-core/tools version 2.11.1
  • Run at 2024-01-08 13:35:26

kbestak
kbestak approved these changes Jan 8, 2024
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LGTM

@kbestak kbestak merged commit 81eafe9 into dev Jan 8, 2024
6 checks passed
@kbestak kbestak deleted the molkartqc_hotfix branch January 8, 2024 13:58
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@kbestak kbestak kbestak approved these changes

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@FloWuenne @kbestak