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chore: Fix config selectors
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edmundmiller committed Oct 22, 2024
1 parent af25b3f commit acbdcfc
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Showing 2 changed files with 3 additions and 3 deletions.
4 changes: 2 additions & 2 deletions conf/modules.config
Original file line number Diff line number Diff line change
Expand Up @@ -106,7 +106,7 @@ process {
]
}

withName: ".*:FASTQ_ALIGN_HISAT2:HISAT2_ALIGN" {
withName: "HISAT2_ALIGN" {
ext.args = "--met-stderr --new-summary --dta"
publishDir = [
[
Expand Down Expand Up @@ -256,7 +256,7 @@ process {
]
}

withName: '.*:BAM_RSEQC:RSEQC_READDISTRIBUTION ' {
withName: '.*:BAM_RSEQC:RSEQC_READDISTRIBUTION' {
publishDir = [
path: { "${params.outdir}/quality_control/rseqc/read_distribution" },
mode: params.publish_dir_mode,
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2 changes: 1 addition & 1 deletion conf/test.config
Original file line number Diff line number Diff line change
Expand Up @@ -39,7 +39,7 @@ params {
}

process {
withName: STAR_GENOMEGENERATE_IGENOMES {
withName: STAR_GENOMEGENERATE {
ext.args = '--genomeSAindexNbases 9'
}

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