Code

simplify TABIX generation + refactor#48

Code

Merged

maxulysse merged 28 commits intonf-core:devnf-core/references:devfrom maxulysse:simplify_vcfmaxulysse/nf-core_references:simplify_vcfCopy head branch name to clipboardDec 4, 2024

+602-523

Commits

Commits on Dec 2, 2024

• simplify TABIX generation

  maxulysse

  committed
  19e3c94

• update CHANGELOG

  maxulysse

  committed
  f7aa2c1

• Fix input fasta non existing

  maxulysse

  committed
  537e2ab

• fix typo

  maxulysse

  committed
  5761521

• Merge branch 'dev' into simplify_vcf

  maxulysse

  committed
  7ccf815

• Fix input fasta channel when non existing fasta

  maxulysse

  committed
  5f3d3d9

• typo

  maxulysse

  committed
  e7f9c6f

• fix typo

  maxulysse

  committed
  d0940b8

Commits on Dec 3, 2024

• refactor

  maxulysse

  committed
  53fb552

• better gff / gtf handling

  maxulysse

  committed
  ac8d23b

• restore output

  maxulysse

  committed
  3d65e66

• fix vcf inputs

  maxulysse

  committed
  6d52079

• better handling of fasta_transcript

  maxulysse

  committed
  61b06ac

• forgot versions

  maxulysse

  committed
  d058e87

• better handling of splice_sites

  maxulysse

  committed
  3e8c72c

• code polish

  maxulysse

  committed
  0b1a20a

• typo

  maxulysse

  committed
  2f82928

• handle existing fai, sizes and intervals

  maxulysse

  committed
  afa29c1

• update CHANGELOG

  maxulysse

  committed
  53cf72c

• code polish

  maxulysse

  committed
  c8ffd85

• fix handling of existing fai

  maxulysse

  committed
  a167a5c

• better comments

  maxulysse

  committed
  7108fda

• Merge branch 'nf-core:dev' into simplify_vcf

  maxulysse

  authored
  c164baa

• Merge branch 'dev' into simplify_vcf

  maxulysse

  authored
  f1817ae

• document output structure

  maxulysse

  committed
  50e6c43

• badly merge conflicts

  maxulysse

  committed
  1b6bd6b

• code polish

  maxulysse

  committed
  4974124

• fix typo

  maxulysse

  committed
  95949e4