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Add nf-test for local subworkflow ARRIBA_WORKFLOW #578

Merged
merged 12 commits into from
Dec 11, 2024
Merged

Add nf-test for local subworkflow ARRIBA_WORKFLOW #578

merged 12 commits into from
Dec 11, 2024
+561 −67

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alanmmobbs93
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PR checklist

Closes rnafusion #530

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/rnafusion branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

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github-actions bot commented Dec 9, 2024 •
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nf-core pipelines lint overall result: Passed ✅

Posted for pipeline commit d9cedb1

+| ✅ 222 tests passed       |+
#| ❔   2 tests were ignored |#

❔ Tests ignored:

  • files_unchanged - File ignored due to lint config: .github/CONTRIBUTING.md
  • files_unchanged - File ignored due to lint config: .github/PULL_REQUEST_TEMPLATE.md

✅ Tests passed:

Run details

  • nf-core/tools version 3.0.2
  • Run at 2024-12-11 19:01:14

@alanmmobbs93 alanmmobbs93 marked this pull request as draft December 9, 2024 13:11
@alanmmobbs93 alanmmobbs93 marked this pull request as ready for review December 9, 2024 19:14
@alanmmobbs93
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I left some comments that I think can be improved in further iterations, what do you think?

atrigila
atrigila approved these changes Dec 11, 2024
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Great job!

@alanmmobbs93 alanmmobbs93 merged commit 077eb17 into nf-core:dev Dec 11, 2024
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@atrigila atrigila atrigila approved these changes

@nschcolnicov nschcolnicov Awaiting requested review from nschcolnicov

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@alanmmobbs93 @atrigila @nschcolnicov