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Remove local module STARFUSION_DOWNLOAD #599

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Dec 26, 2024
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1 change: 1 addition & 0 deletions CHANGELOG.md
Original file line number Diff line number Diff line change
Expand Up @@ -40,6 +40,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
- Integrate reference building in the main workflow [#505](https://github.com/nf-core/rnafusion/pull/505)
- Move from ensembl to gencode base [#505](https://github.com/nf-core/rnafusion/pull/505)
- Update from ensembl 102 to gencode 46 default references [#505](https://github.com/nf-core/rnafusion/pull/505)
- Remove local module `STARFUSION_DOWNLOAD` [#598](https://github.com/nf-core/rnafusion/pull/598)

### Fixed

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10 changes: 0 additions & 10 deletions conf/modules.config
Original file line number Diff line number Diff line change
Expand Up @@ -371,16 +371,6 @@ process {
ext.args = "--max_readlength ${params.read_length} --human_gencode_filter"
}

withName: 'STARFUSION_DOWNLOAD' {
cpus = { 2 * task.attempt }
memory = { 24.GB * task.attempt }
time = { 6.h * task.attempt }
publishDir = [
path: { "${params.genomes_base}/starfusion" },
mode: params.publish_dir_mode,
saveAs: { filename -> filename.equals('versions.yml') ? null : filename },
]
}

withName: 'STRINGTIE_MERGE' {
publishDir = [
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8 changes: 0 additions & 8 deletions modules/local/starfusion/download/environment.yml

This file was deleted.

34 changes: 0 additions & 34 deletions modules/local/starfusion/download/main.nf

This file was deleted.

25 changes: 0 additions & 25 deletions modules/local/starfusion/download/meta.yml

This file was deleted.

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