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Add test suite for UMI handling functionality #3191

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Add test suite for UMI handling functionality

Add test suite for UMI handling functionality #3191

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Job Run time
Check for changes
24s
Run tests (subworkflows/nf-core/bam_dedup_stats_samtools_umitools/tests/main.nf.test docker NF-24.04.2)
3m 30s
Run tests (subworkflows/nf-core/bam_dedup_stats_samtools_umitools/tests/main.nf.test singularity NF-24.04.2)
5m 7s
Run tests (tests/min_mapped_reads.nf.test docker NF-24.04.2)
2m 43s
Run tests (tests/min_mapped_reads.nf.test singularity NF-24.04.2)
3m 3s
Run tests (modules/nf-core/umicollapse/tests/main.nf.test docker NF-24.04.2)
4m 27s
Run tests (modules/nf-core/umicollapse/tests/main.nf.test singularity NF-24.04.2)
4m 30s
Run tests (subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.function.nf.test docker NF-24.04.2)
3m 12s
Run tests (subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.function.nf.test singularity NF-24.04.2)
3m 17s
Run tests (tests/skip_qc.nf.test docker NF-24.04.2)
2m 1s
Run tests (tests/skip_qc.nf.test singularity NF-24.04.2)
2m 28s
Run tests (tests/kallisto.nf.test docker NF-24.04.2)
3m 15s
Run tests (tests/kallisto.nf.test singularity NF-24.04.2)
3m 9s
Run tests (modules/nf-core/fq/lint/tests/main.nf.test docker NF-24.04.2)
3m 26s
Run tests (modules/nf-core/fq/lint/tests/main.nf.test singularity NF-24.04.2)
3m 6s
Run tests (modules/nf-core/umitools/dedup/tests/main.nf.test docker NF-24.04.2)
5m 11s
Run tests (modules/nf-core/umitools/dedup/tests/main.nf.test singularity NF-24.04.2)
6m 17s
Run tests (subworkflows/nf-core/bam_dedup_stats_samtools_umicollapse/tests/main.nf.test docker NF-24.04.2)
3m 33s
Run tests (subworkflows/nf-core/bam_dedup_stats_samtools_umicollapse/tests/main.nf.test singularity NF-24.04.2)
3m 25s
Run tests (subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_completion.workflow.nf.test docker NF-24.04.2)
2m 57s
Run tests (subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_completion.workflow.nf.test singularity NF-24.04.2)
3m 5s
Run tests (subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.function.nf.test docker NF-24.04.2)
5m 38s
Run tests (subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.function.nf.test singularity NF-24.04.2)
5m 31s
Run tests (tests/star_rsem.nf.test docker NF-24.04.2)
1m 58s
Run tests (tests/star_rsem.nf.test singularity NF-24.04.2)
1m 44s
Run tests (tests/default.nf.test docker NF-24.04.2)
3m 47s
Run tests (tests/default.nf.test singularity NF-24.04.2)
3m 53s
Run tests (tests/salmon.nf.test docker NF-24.04.2)
2m 25s
Run tests (tests/salmon.nf.test singularity NF-24.04.2)
2m 36s
Run tests (tests/remove_ribo_rna.nf.test docker NF-24.04.2)
3m 4s
Run tests (tests/remove_ribo_rna.nf.test singularity NF-24.04.2)
2m 41s
Run tests (tests/hisat2.nf.test docker NF-24.04.2)
3m 15s
Run tests (tests/hisat2.nf.test singularity NF-24.04.2)
3m 15s
Run tests (tests/umi.nf.test docker NF-24.04.2)
1m 39s
Run tests (tests/umi.nf.test singularity NF-24.04.2)
1m 35s
Run tests (tests/featurecounts_group_type.nf.test docker NF-24.04.2)
3m 21s
Run tests (tests/featurecounts_group_type.nf.test singularity NF-24.04.2)
3m 25s
Run tests (subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_initialisation.workflow.nf.test docker NF-24.04.2)
2m 57s
Run tests (subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_initialisation.workflow.nf.test singularity NF-24.04.2)
2m 47s
Run tests (tests/skip_trimming.nf.test docker NF-24.04.2)
2m 0s
Run tests (tests/skip_trimming.nf.test singularity NF-24.04.2)
2m 3s
Run tests (subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.nf.test docker NF-24.04.2)
4m 57s
Run tests (subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.nf.test singularity NF-24.04.2)
4m 9s
Run tests (subworkflows/nf-core/bam_dedup_stats_samtools_umitools/tests/main.nf.test docker NF-latest-everything)
56s
Run tests (tests/min_mapped_reads.nf.test docker NF-latest-everything)
1s
Run tests (modules/nf-core/umicollapse/tests/main.nf.test docker NF-latest-everything)
1m 20s
Run tests (subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.function.nf.test docker NF-latest-everything)
1m 17s
Run tests (tests/skip_qc.nf.test docker NF-latest-everything)
1s
Run tests (tests/kallisto.nf.test docker NF-latest-everything)
7s
Run tests (modules/nf-core/fq/lint/tests/main.nf.test docker NF-latest-everything)
1m 36s
Run tests (modules/nf-core/umitools/dedup/tests/main.nf.test docker NF-latest-everything)
1m 34s
Run tests (subworkflows/nf-core/bam_dedup_stats_samtools_umicollapse/tests/main.nf.test docker NF-latest-everything)
1m 16s
Run tests (subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_completion.workflow.nf.test docker NF-latest-everything)
1m 3s
Run tests (subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.function.nf.test docker NF-latest-everything)
1m 8s
Run tests (tests/star_rsem.nf.test docker NF-latest-everything)
33s
Run tests (tests/default.nf.test docker NF-latest-everything)
34s
Run tests (tests/salmon.nf.test docker NF-latest-everything)
18s
Run tests (tests/remove_ribo_rna.nf.test docker NF-latest-everything)
1s
Run tests (tests/hisat2.nf.test docker NF-latest-everything)
1s
Run tests (tests/umi.nf.test docker NF-latest-everything)
1s
Run tests (tests/featurecounts_group_type.nf.test docker NF-latest-everything)
13s
Run tests (subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_initialisation.workflow.nf.test docker NF-latest-everything)
46s
Run tests (tests/skip_trimming.nf.test docker NF-latest-everything)
29s
Run tests (subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.nf.test docker NF-latest-everything)
45s
confirm-pass
1s
2h 34m 47s