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Factor out umi handling #3198

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Factor out umi handling

Factor out umi handling #3198

Triggered via pull request December 12, 2024 10:53
@pinin4fjordspinin4fjords
synchronize #1466
factor_out_umi
Status Cancelled
Total duration 21m 45s
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ci.yml

on: pull_request
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Matrix: test
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14 errors and 17 warnings
Run tests (tests/umi.nf.test docker NF-24.04.2)
Process completed with exit code 1.
Run tests (tests/umi.nf.test docker NF-24.04.2)
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Run tests (tests/skip_qc.nf.test docker NF-latest-everything)
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Run tests (tests/umi.nf.test docker NF-latest-everything)
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Run tests (tests/remove_ribo_rna.nf.test docker NF-latest-everything)
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Run tests (tests/remove_ribo_rna.nf.test docker NF-latest-everything)
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Run tests (tests/min_mapped_reads.nf.test docker NF-latest-everything)
Canceling since a higher priority waiting request for 'nf-core CI-1466' exists
Run tests (tests/min_mapped_reads.nf.test docker NF-latest-everything)
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Run tests (tests/remove_ribo_rna.nf.test docker NF-24.04.2)
Canceling since a higher priority waiting request for 'nf-core CI-1466' exists
Run tests (tests/remove_ribo_rna.nf.test docker NF-24.04.2)
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Run tests (tests/featurecounts_group_type.nf.test docker NF-latest-everything)
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Run tests (tests/featurecounts_group_type.nf.test docker NF-latest-everything)
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Run tests (tests/hisat2.nf.test docker NF-latest-everything)
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Run tests (tests/hisat2.nf.test docker NF-latest-everything)
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Check for changes
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (tests/salmon.nf.test docker NF-24.04.2)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (tests/kallisto.nf.test docker NF-24.04.2)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (tests/salmon.nf.test docker NF-latest-everything)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (tests/hisat2.nf.test docker NF-24.04.2)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (tests/skip_qc.nf.test docker NF-24.04.2)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (tests/skip_trimming.nf.test docker NF-24.04.2)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (tests/default.nf.test docker NF-24.04.2)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (tests/featurecounts_group_type.nf.test docker NF-24.04.2)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (tests/skip_trimming.nf.test docker NF-latest-everything)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (tests/star_rsem.nf.test docker NF-24.04.2)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (tests/star_rsem.nf.test docker NF-latest-everything)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (tests/min_mapped_reads.nf.test docker NF-24.04.2)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (tests/kallisto.nf.test docker NF-latest-everything)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (tests/default.nf.test docker NF-latest-everything)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (tests/umi.nf.test docker NF-24.04.2)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
confirm-pass
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636