nf-core CI

Factor out umi handling #3199

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Triggered via pull request December 12, 2024 11:14

synchronize #1466

factor_out_umi

Status Success

Total duration 22m 1s

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ci.yml

on: pull_request

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Matrix: test

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ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run tests (tests/kallisto.nf.test docker NF-24.04.2)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run tests (tests/salmon.nf.test docker NF-24.04.2)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run tests (tests/salmon.nf.test docker NF-latest-everything)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run tests (tests/kallisto.nf.test docker NF-latest-everything)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run tests (tests/hisat2.nf.test docker NF-24.04.2)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run tests (tests/skip_qc.nf.test docker NF-latest-everything)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run tests (tests/skip_qc.nf.test docker NF-24.04.2)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run tests (tests/skip_trimming.nf.test docker NF-24.04.2)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run tests (tests/default.nf.test docker NF-24.04.2)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run tests (tests/skip_trimming.nf.test docker NF-latest-everything)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run tests (tests/featurecounts_group_type.nf.test docker NF-24.04.2)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run tests (tests/hisat2.nf.test docker NF-latest-everything)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run tests (tests/min_mapped_reads.nf.test docker NF-24.04.2)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run tests (tests/star_rsem.nf.test docker NF-24.04.2)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run tests (tests/featurecounts_group_type.nf.test docker NF-latest-everything)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run tests (tests/default.nf.test docker NF-latest-everything)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run tests (tests/star_rsem.nf.test docker NF-latest-everything)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run tests (tests/min_mapped_reads.nf.test docker NF-latest-everything)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run tests (tests/umi.nf.test docker NF-24.04.2)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run tests (tests/remove_ribo_rna.nf.test docker NF-24.04.2)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run tests (tests/remove_ribo_rna.nf.test docker NF-latest-everything)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run tests (tests/umi.nf.test docker NF-latest-everything)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

confirm-pass

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636