Submitting workflow to all cloud providers using full sized data #38
Workflow file for this run
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| name: full-sized tests on cloud providers | |
| run-name: Submitting workflow to all cloud providers using full sized data | |
| on: | |
| release: | |
| types: [published] | |
| workflow_dispatch: | |
| inputs: | |
| platform: | |
| description: "Platform to run test" | |
| required: true | |
| default: "all" | |
| type: choice | |
| options: | |
| - all | |
| - aws | |
| - azure | |
| - gcp | |
| jobs: | |
| run-full-tests-on-aws: | |
| if: ${{ github.event.inputs.platform == 'all' || github.event.inputs.platform == 'aws' || !github.event.inputs }} | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| aligner: ["star_salmon", "star_rsem"] | |
| steps: | |
| - uses: seqeralabs/action-tower-launch@v2 | |
| with: | |
| workspace_id: ${{ secrets.TOWER_WORKSPACE_ID }} | |
| access_token: ${{ secrets.TOWER_ACCESS_TOKEN }} | |
| compute_env: ${{ secrets.TOWER_CE_AWS_CPU }} | |
| workdir: "${{ secrets.TOWER_BUCKET_AWS }}/work/rnaseq/work-${{ github.sha }}" | |
| run_name: "aws_rnaseq_full_${{ matrix.aligner }}" | |
| revision: ${{ github.sha }} | |
| profiles: test_full_aws | |
| parameters: | | |
| { | |
| "hook_url": "${{ secrets.MEGATESTS_ALERTS_SLACK_HOOK_URL }}", | |
| "aligner": "${{ matrix.aligner }}", | |
| "outdir": "${{ secrets.TOWER_BUCKET_AWS }}/rnaseq/results-${{ github.sha }}/aligner_${{ matrix.aligner }}/" | |
| } | |
| - uses: actions/upload-artifact@v3 | |
| with: | |
| name: Tower debug log file | |
| path: tower_action_*.log | |
| run-full-tests-on-azure: | |
| if: ${{ github.event.inputs.platform == 'all' || github.event.inputs.platform == 'azure' || !github.event.inputs }} | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| aligner: ["star_salmon", "star_rsem"] | |
| steps: | |
| - uses: seqeralabs/action-tower-launch@v2 | |
| with: | |
| workspace_id: ${{ secrets.TOWER_WORKSPACE_ID }} | |
| access_token: ${{ secrets.TOWER_ACCESS_TOKEN }} | |
| compute_env: ${{ secrets.TOWER_CE_AZURE_CPU }} | |
| workdir: "${{ secrets.TOWER_BUCKET_AZURE }}/work/rnaseq/work-${{ github.sha }}" | |
| run_name: "azure_rnaseq_full_${{ matrix.aligner }}" | |
| revision: ${{ github.sha }} | |
| profiles: test_full_azure | |
| parameters: | | |
| { | |
| "hook_url": "${{ secrets.MEGATESTS_ALERTS_SLACK_HOOK_URL }}", | |
| "aligner": "${{ matrix.aligner }}", | |
| "outdir": "${{ secrets.TOWER_BUCKET_AZURE }}/rnaseq/results-${{ github.sha }}/aligner_${{ matrix.aligner }}/", | |
| "igenomes_base": "${{ secrets.TOWER_IGENOMES_BASE_AZURE }}" | |
| } | |
| - uses: actions/upload-artifact@v3 | |
| with: | |
| name: Tower debug log file | |
| path: tower_action_*.log | |
| run-full-tests-on-gcp: | |
| if: ${{ github.event.inputs.platform == 'gcp' || !github.event.inputs }} | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| aligner: ["star_salmon", "star_rsem"] | |
| steps: | |
| - uses: seqeralabs/action-tower-launch@v2 | |
| with: | |
| workspace_id: ${{ secrets.TOWER_WORKSPACE_ID }} | |
| access_token: ${{ secrets.TOWER_ACCESS_TOKEN }} | |
| compute_env: ${{ secrets.TOWER_CE_GCP_CPU }} | |
| workdir: "${{ secrets.TOWER_BUCKET_GCP }}/work/rnaseq/work-${{ github.sha }}" | |
| run_name: "gcp_rnaseq_full_${{ matrix.aligner }}" | |
| revision: ${{ github.sha }} | |
| profiles: test_full_gcp | |
| parameters: | | |
| { | |
| "hook_url": "${{ secrets.MEGATESTS_ALERTS_SLACK_HOOK_URL }}", | |
| "aligner": "${{ matrix.aligner }}", | |
| "outdir": "${{ secrets.TOWER_BUCKET_GCP }}/rnaseq/results-${{ github.sha }}/aligner_${{ matrix.aligner }}/" | |
| } | |
| - uses: actions/upload-artifact@v3 | |
| with: | |
| name: Tower debug log file | |
| path: tower_action_*.log |