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Remove more redundant includes
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pinin4fjords committed Dec 12, 2024
1 parent b11cf6a commit ed77b0d
Showing 1 changed file with 0 additions and 4 deletions.
4 changes: 0 additions & 4 deletions workflows/rnaseq/main.nf
Original file line number Diff line number Diff line change
Expand Up @@ -57,10 +57,6 @@ include { softwareVersionsToYAML } from '../../subworkflows/nf-core/ut
include { FASTQ_ALIGN_HISAT2 } from '../../subworkflows/nf-core/fastq_align_hisat2'
include { BAM_MARKDUPLICATES_PICARD } from '../../subworkflows/nf-core/bam_markduplicates_picard'
include { BAM_RSEQC } from '../../subworkflows/nf-core/bam_rseqc'
include { BAM_DEDUP_STATS_SAMTOOLS_UMICOLLAPSE as BAM_DEDUP_STATS_SAMTOOLS_UMICOLLAPSE_GENOME } from '../../subworkflows/nf-core/bam_dedup_stats_samtools_umicollapse'
include { BAM_DEDUP_STATS_SAMTOOLS_UMICOLLAPSE as BAM_DEDUP_STATS_SAMTOOLS_UMICOLLAPSE_TRANSCRIPTOME } from '../../subworkflows/nf-core/bam_dedup_stats_samtools_umicollapse'
include { BAM_DEDUP_STATS_SAMTOOLS_UMITOOLS as BAM_DEDUP_STATS_SAMTOOLS_UMITOOLS_GENOME } from '../../subworkflows/nf-core/bam_dedup_stats_samtools_umitools'
include { BAM_DEDUP_STATS_SAMTOOLS_UMITOOLS as BAM_DEDUP_STATS_SAMTOOLS_UMITOOLS_TRANSCRIPTOME } from '../../subworkflows/nf-core/bam_dedup_stats_samtools_umitools'
include { BEDGRAPH_BEDCLIP_BEDGRAPHTOBIGWIG as BEDGRAPH_BEDCLIP_BEDGRAPHTOBIGWIG_FORWARD } from '../../subworkflows/nf-core/bedgraph_bedclip_bedgraphtobigwig'
include { BEDGRAPH_BEDCLIP_BEDGRAPHTOBIGWIG as BEDGRAPH_BEDCLIP_BEDGRAPHTOBIGWIG_REVERSE } from '../../subworkflows/nf-core/bedgraph_bedclip_bedgraphtobigwig'
include { QUANTIFY_PSEUDO_ALIGNMENT as QUANTIFY_STAR_SALMON } from '../../subworkflows/nf-core/quantify_pseudo_alignment'
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