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Add bam/cram support #347

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Add bam/cram support

Add bam/cram support #347

Triggered via pull request January 7, 2025 15:35
@nvnieuwknvnieuwk
synchronize #157
nvnieuwk:add-bam/cram-support
Status Cancelled
Total duration 39m 22s
Artifacts –

ci.yml

on: pull_request
Matrix: test
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16 errors and 14 warnings
Test pipeline | docker | 24.04.2 | 4/5
Process completed with exit code 1.
Test pipeline | docker | 24.04.2 | 4/5
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration - https://docs.github.com/rest/checks/runs#create-a-check-run)
Test pipeline | docker | latest-everything | 4/5
Process completed with exit code 1.
Test pipeline | docker | latest-everything | 4/5
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration - https://docs.github.com/rest/checks/runs#create-a-check-run)
Test pipeline | docker | latest-everything | 3/5
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration - https://docs.github.com/rest/checks/runs#create-a-check-run)
Test pipeline | docker | latest-everything | 3/5
Process completed with exit code 1.
Test pipeline | docker | 24.04.2 | 2/5
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration - https://docs.github.com/rest/checks/runs#create-a-check-run)
Test pipeline | docker | 24.04.2 | 2/5
Process completed with exit code 1.
Test pipeline | docker | latest-everything | 1/5
Process completed with exit code 1.
Test pipeline | docker | latest-everything | 1/5
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration - https://docs.github.com/rest/checks/runs#create-a-check-run)
Test pipeline | docker | 24.04.2 | 1/5
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration - https://docs.github.com/rest/checks/runs#create-a-check-run)
Test pipeline | docker | 24.04.2 | 1/5
Process completed with exit code 1.
Test pipeline | docker | latest-everything | 2/5
Process completed with exit code 1.
Test pipeline | docker | latest-everything | 2/5
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration - https://docs.github.com/rest/checks/runs#create-a-check-run)
Test pipeline | docker | 24.04.2 | 3/5
Canceling since a higher priority waiting request for 'nf-core CI-157' exists
Test pipeline | docker | 24.04.2 | 3/5
The operation was canceled.
Test pipeline | docker | 24.04.2 | 4/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test pipeline | docker | 24.04.2 | 4/5
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Test pipeline | docker | latest-everything | 4/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test pipeline | docker | latest-everything | 4/5
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Test pipeline | docker | latest-everything | 3/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test pipeline | docker | latest-everything | 3/5
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Test pipeline | docker | 24.04.2 | 2/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test pipeline | docker | 24.04.2 | 2/5
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Test pipeline | docker | latest-everything | 1/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test pipeline | docker | latest-everything | 1/5
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Test pipeline | docker | 24.04.2 | 1/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test pipeline | docker | 24.04.2 | 1/5
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Test pipeline | docker | latest-everything | 2/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test pipeline | docker | latest-everything | 2/5
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23