quest branch contiene tutte le modifiche che ho fatto allo script nell'ultima settimana, comprese le integrazioni dei subworkflow ed deeptools, inoltre ho aggiunto un parametro per terminare l'analisi dopo specifici passaggi che possono essere indicati con un parametro da tastiera #7

	name: nf-core CI
	# This workflow runs the pipeline with the minimal test dataset to check that it completes without any syntax errors
	on:
	push:
	branches:
	- dev
	pull_request:
	release:
	types: [published]

	env:
	NXF_ANSI_LOG: false

	concurrency:
	group: "${{ github.workflow }}-${{ github.event.pull_request.number \|\| github.ref }}"
	cancel-in-progress: true

	jobs:
	test:
	name: Run pipeline with test data
	# Only run on push if this is the nf-core dev branch (merged PRs)
	if: "${{ github.event_name != 'push' \|\| (github.event_name == 'push' && github.repository == 'nf-core/sammyseq') }}"
	runs-on: ubuntu-latest
	strategy:
	matrix:
	NXF_VER:
	- "23.04.0"
	- "latest-everything"
	steps:
	- name: Check out pipeline code
	uses: actions/checkout@v3

	- name: Install Nextflow
	uses: nf-core/setup-nextflow@v1
	with:
	version: "${{ matrix.NXF_VER }}"

	- name: Run pipeline with test data
	# TODO nf-core: You can customise CI pipeline run tests as required
	# For example: adding multiple test runs with different parameters
	# Remember that you can parallelise this by using strategy.matrix
	run: \|
	nextflow run ${GITHUB_WORKSPACE} -profile test,docker --outdir ./results

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