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Update modules.config
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removed empty lines
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daisymut authored Oct 6, 2023
1 parent 4e66a4a commit 4cc95bb
Showing 1 changed file with 2 additions and 22 deletions.
24 changes: 2 additions & 22 deletions conf/modules.config
Original file line number Diff line number Diff line change
Expand Up @@ -12,8 +12,6 @@

process {



publishDir = [
path: { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" },
mode: params.publish_dir_mode,
Expand Down Expand Up @@ -53,21 +51,11 @@ process {
publishDir = [
enabled: false
]
ext.args2 = 'ILLUMINACLIP:TruSeq3-PE.fa:2:30:10:2:True LEADING:3 TRAILING:3 MINLEN:36'
ext.args2 = 'ILLUMINACLIP:TruSeq3-PE.fa:2:30:10:2:True LEADING:3 TRAILING:3 MINLEN:36'
}


//
// Alignment options
//






//
// Picard MarkDuplicates and Filtering options
// Alignment, Picard MarkDuplicates and Filtering options
//

withName: '.*BAM_MARKDUPLICATES_PICARD:PICARD_MARKDUPLICATES' {
Expand Down Expand Up @@ -110,12 +98,4 @@ process {
]
}









}

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